Method for the isolation of microvesicles

ABSTRACT

The present disclosure relates to a method for the isolation of microvesicles comprising contacting the sample with at least one polysaccharide to isolate the microvesicles.

FIELD

This disclosure relates to a method for the isolation of microvesicles using polysaccharides.

BACKGROUND

Microvesicles (MVs) are a spectrum of membrane-bound bodies having a size of about 10 nm to about 5000 nm, more typically between 30 nm and 1000 nm containing cytoplasmic material shed by cells during various physiological conditions. Microvesicles have long been regarded as cellular debris. Microvesicles contain and transport proteins and nucleic acids. However, it has recently been demonstrated that microvesicles are distinguished from mere debris and it has been established that microvesicles have normal, as well as pathological, inter-cellular signalling functions. Increased levels of microvesicles are detected in blood and other body fluids in cancers and various pathological conditions¹⁻¹¹. Thus the significance of microvesicles as diagnostic tool is well established yet technologies for routine clinical diagnostic and prognostic application of microvesicles are not well developed¹²⁻¹³.

SUMMARY

This disclosure relates to methods for the isolation of microvesicles from a sample containing microvesicles comprising contacting the sample with at least one polysaccharide under conditions for the isolation of the microvesicles.

The disclosure also includes a method for the diagnosis of a pathological condition, such as cancer, comprising

(i) obtaining a biological sample from a subject;

(ii) isolating microvesicles from the sample using a method of the present disclosure;

(iii) detecting one or more pathological markers, such as a cancer biomarker, and/or markers for a particular tissue or cell-type, wherein the presence or absence of the pathological marker in the sample indicates the presence of the condition in the subject.

In addition, the present disclosure also includes a method for monitoring the progression of a pathological condition, such as cancer, the method comprising isolating microvesicles from the sample obtained from a subject using a method of the present disclosure to obtain a reference value comprising one or more markers, such as markers for a particular tissue or cell-type and/or one or more cancer biomarkers and comparing them with the values of microvesicles in samples taken from the subject at a plurality of time points, wherein any difference in the level of marker(s) in those microvesicles relative to the reference value over time indicates progression of the pathological condition, such as cancer, and an opposite reading of the marker(s) in those microvesicles relative to the reference value over time indicates amelioration of the cancer and/or other pathological conditions.

The present disclosure also includes methods of determining the effectiveness of therapy in the treatment of a pathological condition, such as cancer. Accordingly, there is included a method for determining if a subject, suffering from a pathological condition, is responsive to a therapy for treatment of the condition, comprising,

(i) isolating a first amount of microvesicles in a first biological sample obtained from a subject using a method of the present disclosure;

(ii) measuring for one or more markers, such as a cancer biomarker, in the microvesicles from the first biological sample;

(iii) subsequently administering the therapy to the subject;

(iv) isolating a second amount of microvesicles in a second biological sample from the subject using a method of the present disclosure;

(v) measuring for the one or more markers, such as a cancer biomarker, in the microvesicles from the second biological sample,

wherein a difference in the one or more markers, such as a cancer biomarker, in the second amount of microvesicles compared to the values of the first amount of microvesicles in the first biological sample indicates the degree of responsiveness to the therapy in the subject.

The present disclosure also includes an assay for detecting a pathological condition in an animal, such as farmed animals, birds or fish, comprising:

(i) isolating an amount of microvesicles in a control sample from a healthy animal (an animal without the pathological condition) using a method of the present disclosure;

(ii) measuring for one or more markers in the microvesicles from the control sample;

(iii) isolating an amount of microvesicles in a test sample from the animal using a method of the present disclosure;

(iv) measuring for the one or more markers in the microvesicles from the test sample,

wherein a change (increase or decrease) in the one or more markers in the microvesicles from the test sample compared to the control-sample indicates the presence of a pathological conditions in the animal. Depending on the pathological condition, the presence of one or more of the markers will increase or decrease. For example, an infection will result in the pathological marker being higher in the test samples than the control, while a metabolic disease will result in the marker being lower in test samples than the control. Examples of biomarkers include, but are not limited to, metabolites, proteins, peptides, DNA, RNA, mRNA, miRNA, LincRNA, misc-RNA, circular-RNA, etc.

The present disclosure also includes an assay for analyzing food quality, such as dairy and meat products. Accordingly, there is included a method for determining the quality of a food sample, for example, a meat or dairy food sample, comprising,

(i) isolating an amount of microvesicles from a safe control sample or a standard using a method of the present disclosure;

(ii) measuring for one or more markers in the microvesicles from the safe control sample;

(iii) isolating an amount of microvesicles in a test sample using a method of the present disclosure;

(iv) measuring for the one or more markers in the microvesicles from the test sample,

wherein an increase in the one or more markers in the microvesicles isolated from the test sample compared to the values of the control-sample indicates the food sample has been contaminated with a pathogen. Examples of biomarkers include, but are not limited to, metabolites, proteins, peptides, DNA, RNA, mRNA, miRNA, LincRNA, misc-RNA, circular-RNA, etc.

The present disclosure also includes a method of isolation and subsequent testing of microvesicles from the fluid, media or discharges from any organism (unicellular to multicellular, wild or farmed).

Further aspects and advantages of the embodiments described herein will appear from the following description taken together with the accompanying drawings.

BRIEF DESCRIPTION OF THE DRAWINGS

For a better understanding of the embodiments described herein and to show more clearly how they may be carried into effect, reference will now be made, by way of example only, to the accompanying drawings which show at least one exemplary embodiment, and in which:

FIG. 1A are graphs showing the particle size of isolated microvesicles from a healthy subject and a breast cancer patient's plasma using a method of the disclosure from different cell lines

FIG. 1B shows a series of transmission electron micrographs demonstrating the isolation of microvesicles from breast cancer cell-line (MCF10A and MDA-MB-231) conditioned media, plasma of a healthy subject and a breast cancer patient's plasma in an embodiment of a method of the disclosure;

FIG. 1C shows a series of atomic force micrographs demonstrating the isolation of microvesicles from breast cancer cell-line (SKBR3) conditioned media, plasma of a healthy subject and a breast cancer patient's plasma in an embodiment of a method of the disclosure;

FIG. 2 shows a Venn diagram of numbers of identified intact cellular mRNAs found in microvesicles isolated by both conventional ultracentrifugation and microvesicles isolated using a method of the disclosure;

FIG. 3A is a Polyacrylamide gel electrophoresis photograph demonstrating the detection of micro-RNA from microvesicles isolated using an embodiment of a method of the disclosure;

FIG. 3B (insert) is a flow diagram of the molecular biological techniques followed for the detection of miRNAs;

FIG. 4 is an immuno-blot analysis and corresponding Coomassie Blue stained protein polyacrylamide gel electrophoresis photographs demonstrating the detection of heat shock protein-70 in microvesicles isolated using an embodiment of a method of the disclosure;

FIG. 5 are a Coomassie Blue stained protein-polyacrylamide gel electrophoresis photographs of total protein content of microvesicles from healthy human plasma, breast cancer and prostate cancer patients' plasma using an embodiment of a method of the disclosure;

FIG. 6 is an immuno-blot analysis and corresponding stained protein Polyacrylamide gel electrophoresis photographs demonstrating the detection of heat shock protein-90 in microvesicles isolated using an embodiment of a method of the disclosure;

FIG. 7 is an immuno-blot analysis and corresponding stained protein Polyacrylamide gel electrophoresis photographs demonstrating the detection of glyceraldehyde 3-phosphate dehydrogenase (GAPDH) in microvesicles isolated using an embodiment of a method of the disclosure;

FIG. 8 is a malignant transformation assay using non-transformed mouse fibroblasts in soft agar demonstrating that microvesicles isolated using polysaccharides in an embodiment of a method of the disclosure from normal (MCF10A), less aggressive (MCF7) and more aggressive (MDA-MB-231) have differential capabilities of transforming a normal cell to cancerous cell;

FIG. 9 are immunofluorescence micrographs showing internalization of microvesicles (isolated from conditioned media of breast cell lines MCF10A and MDA-MB-231) using a method of the disclosure into normal breast host cells (MCF-10A); and

FIG. 10 are immunofluorescence micrographs showing internalization of microvesicles isolated from normal subject's and breast cancer patient's plasma using a method of the disclosure into normal host cells of different tissue of origin.

DETAILED DESCRIPTION (I) Definitions

The term “microvesicles” as used herein refers to a membrane-bound particle having a diameter (or largest dimension where the particle is not spheroid) of between about 10 nm to about 5000 nm, more typically between 30 nm and 1000 nm, wherein at least part of the membrane of the microvesicle is directly obtained from a cell of single or multicellular organism. Therefore, microvesicles include those that are shed from a donor cell, and will typically also include exosomes¹⁻¹². Therefore, and depending on the manner of generation (e.g., membrane inversion, exocytosis, shedding, or budding), the microvesicles contemplated herein may exhibit different surface/lipid characteristics. Microvesicles are also referred to as “exosomes”, “microsomes”, “secretory exosomes”, “argosomes” and “microparticles”, which are included within the definition.

The term “isolation” or “isolating” as used herein refers to a method of the present disclosure to separate, enrich and/or purify microvesicles from a particular sample.

The term “sample” as used herein refers to a material or mixture of materials containing microvesicles and includes biological samples and clinical samples that contain microvesicles for isolation. Samples may be obtained from human subjects or an organism, such as an animal, and may include a bodily fluid (such as blood, blood serum, plasma, urine, milk and saliva) or tissue biopsy or the fluid, media or discharges form any organism (unicellular to multicellular, wild or farmed).

The term “contacting” as used herein refers to the manner in which a sample and at least one polysaccharide are mixed, or blended, such that the polysaccharides and microvesicles in the sample are able to form a polysaccharide-microvesicle complex.

The term “polysaccharide” as used herein in its ordinary sense refers to polymeric carbohydrate structures, formed of repeating units of monosaccharides, such as six-carbon-monosaccharides, joined by glycosidic bonds. Polysaccharides may be a homopolysaccharide or a heteropolysaccharide depending on the monosaccharide components: a homopolysaccharide consists of same types of monosaccharides whereas a heteropolysaccharide is composed of different types of monosaccharides. The polysaccharides may be linear, but may also include various degrees of branching. The term polysaccharide includes those having typically 10 or more repeat units. The polysaccharides can be from any source, for example, they can be derived from plant material, animal material, bacteria (naturally-occurring or genetically engineered), cultured mammalian cell-lines (naturally-occurring or genetically engineered), cultured protozoa (naturally-occurring or genetically engineered), yeast (naturally-occurring or genetically engineered), insect-cells (naturally-occurring or genetically engineered) or can be produced synthetically. The polysaccharides can be subjected to one or more processing steps, for example, purification, chemical-fuctionalization, attachment to solid supports, and the like methods described in arts. Any suitable method known in the art for synthesizing, preparing, and/or purifying suitable polysaccharides can be employed.

The term “conditions for the isolation of the microvesicles” as used herein refers to the conditions in which the isolation of the microvesicles from the sample is attained, for example, suitable temperatures, duration, dilution of biological sample with physiological saline, pre-clearing, centrifugation force, solid matrix assisted isolation, etc.

The term “suitable” as used herein means that the selection of the particular conditions would depend on the specific manipulation to be performed, and the identity of the molecule(s) involved, but the selection would be well within the skill of a person trained in the art. Unless otherwise indicated, all methods and assays described herein are to be conducted under conditions sufficient to achieve the desired result. A person skilled in the art would understand that all such conditions, including, for example, solvent, time, temperature, pressure, and/or molar, volume or weight ratios, can be varied to optimize the desired result and it is within their skill to do so.

The term “method of the disclosure” as used herein refers to a method of isolating microvesicles using one or more polysaccharides, including all of the various embodiments thereof, described herein.

The term “microfluidics” refers to an apparatus for precise manipulation of liquids in minute volume, typically 200 nano-liters to 100 micro-liters.

The term “subject” as used herein refers to the source organism from where a sample is obtained and includes but is not limited to human, animal, fish, bird and other unicellular and multicellular organisms.

The term “marker” when used in the context of a “marker”, “biomarker” or “pathological marker” as used herein refers to biological molecules or cellular events that link to a specific health outcome and help in understanding degree of risk for disease or pathological condition. A person skilled in the art would understand that a marker is a characteristic that is objectively measured and evaluated as an indicator of normal biological processes, pathogenic processes, or pharmacologic responses to a therapeutic intervention¹⁴. Examples of biomarkers include, but are not limited to, metabolites, proteins, peptides, DNA, RNA, mRNA, miRNA, LincRNA, misc-RNA, circular-RNA, etc. The markers are found within the microvescicles.

In understanding the scope of the present disclosure, the term “comprising” and its derivatives, as used herein, are intended to be open ended terms that specify the presence of the stated features, elements, components, groups, integers, and/or steps, but do not exclude the presence of other unstated features, elements, components, groups, integers and/or steps. The foregoing also applies to words having similar meanings such as the terms, “including”, “having” and their derivatives. Finally, terms of degree such as “substantially”, “about” and “approximately” as used herein mean a reasonable amount of deviation of the modified term such that the end result is not significantly changed. These terms of degree should be construed as including a deviation of at least ±5% of the modified term if this deviation would not negate the meaning of the word it modifies.

(II) Method for the Isolation of Microvesicles

Increased levels and/or different populations of microvesicles are detected in bodily fluids, such as blood, when pathological conditions, such as cancer, are present in the body. Thus, methods for isolating microvesicles are beneficial for the early diagnosis of pathological conditions, such as cancer.

The present disclosure relates to a method of isolating microvesicles from a sample. Accordingly, in one embodiment there is provided a method for the isolation of microvesicles from a sample containing microvesicles, comprising:

(i) contacting the sample with at least one polysaccharide under conditions for the isolation of the microvesicles.

Without being bound by theory, it is believed that the polysaccharides used in the method of the present disclosure bind to one or more proteins, glycoproteins, lipid and/or nucleic acid of the microvesicles allowing for the isolation of the microvesicles.

In some embodiments, the polysaccharide is a natural or synthetic polysaccharide. The polysaccharide for isolating the microvesicles may be a linear or a branched polysaccharide. The polysaccharide may be of any molecular weight, but in some embodiments, the polysaccharide has a molecular weight of at least 2 Kilodalton (KDa) to 10 Megadalton (MDa), optionally between 3 KDa and 7 MDa. In certain embodiment, the polysaccharide has a molecular weight of at least 2 KDa, optionally 3 KDa, optionally 15 KDa, optionally 100 KDa, optionally 150 Kda, optionally 500 KDa, optionally 1 MDa, optionally 5 MDa, optionally 7 MDa or above.

Examples of the at least one polysaccharide encompassed by the present disclosure, include, but are not limited to, amylose, cellulose, chitin, agarose, dextran, dextran sulfate, callose, laminarin, chrysolaminarin, mannan, fucoidan, glycogen, amylopectin, cellulose, chitin, a glycosaminoglycan, and derivatives of any of the above, or mixtures thereof. Examples of glycosaminoglycan include, but are not limited to, chondroitin sulfate, dermatan sulfate, keratan sulfate, heparin, heparan sulfate or hyaluronan. In one embodiment, the at least one polysaccharide is hyaluronan.

In other embodiments, the polysaccharide is bonded to solid supports which aid in the separation of the microvesicles from the sample. For example, the polysaccharide may be bonded to a solid-matrix such as polystyrene or glass, which helps in the isolation of the microvesicles from the sample. In other embodiments, the solid matrix comprises polystyrene coated paramagnetic particles which is then easily isolated using a magnetic field.

In some embodiments, the polysaccharide is bonded to a ligand to help in the purification of the microvesicles from the sample. For example, the polysaccharide is bound to a component of the biotin-avidin system. For example, the polysaccharide may be bound to biotin, and the microvesicles are isolated from the sample by exposing the biotin-bound polysaccharide to avidin or a solid matrix containing avidin. It is understood that the biotin label is stable and small; it rarely interferes with the function of labeled molecules to be used for the development of robust and highly sensitive assays. Avidin and other biotin-binding proteins, including streptavidin and NeutrAvidin Protein. These biotin binding proteins can be coated onto polystyrene, glass and paramagnetic particles or matrix as described in arts.

In some embodiments, the one or more polysaccharide is bonded or printed to a matrix comprising silicons [for example Polydimethylsiloxane (PDMS)] or other surface of microfluidic apparatus to help in the purification of the microvesicles from the sample. In other embodiments, the micro-fluidic apparatus includes downstream molecular analysis such as PCR, identification of protein and/or nucleic acids, etc.

The samples from which microvesicles are isolated may be any sample which contains microvesicles, for example a biological sample. Biological samples include, but are not limited to, whole blood, sputum, seminal fluid, blood serum, plasma, urine, saliva, milk or any other bodily fluid containing microvesicles. Other samples include biopsy from different organs, lymphs, bone marrow and stool samples of subjects and fluid, media or discharges from any organism (unicellular to multicellular, wild or farmed animals or fish) which are pre-cleared before microvesicles isolation.

When the method of isolating microvesicles is used for the diagnosis of a pathological condition, the biological sample is obtained from a subject suffering from the pathological condition. Examples of pathological conditions include, but are not limited to, cancer; infections caused by viruses, bacteria, fungi, protozoa, multicellular organisms, and aberrant proteins such as prions; non-infectious diseases such as autoimmune diseases, heart disease, stroke, asthma, diabetes, chronic kidney disease, osteoporosis, Alzheimer's disease, etc. In one embodiment, the pathological condition is cancer. For example, bodily fluid such as blood is taken from a subject suspected of having cancer and the microvesicles are isolated using method of disclosure and used for early diagnosis. In one embodiment, microvesicles isolated from blood contain biomarkers of vascular disorders, such as heart disease, and therefore, blood is taken from a subject suspected of having a vascular disorder and the microvesicles are isolated using method of disclosure and use for early diagnosis (see Rautou, P., et al., Circulation. 2012; 125: 1601-1604; Xiong, J., et al., J Cardiovasc. Pharmacol., 2012 February; 59(2):124-32). In another embodiment, increased levels of microvesicles are observed in certain pathological conditions such as unstable angina, atherosclerosis and inflammatory vascular diseases, and the increase in a sample is detected using a method of the disclosure.

In one embodiment, the methods of the disclosure are used to isolate microvesicles from small sample sizes. In one embodiment, the sample size is from 100 micro-liters to 10 milliliters. In another embodiment, the methods of the disclosure are used for samples using a micro-fluidic apparatus wherein the sample size is between 2 micro-liters to 100 micro-liters.

The isolation of the microvesicles from a sample is performed under conditions for the isolation of the microvesicles. In some embodiments, the conditions include:

(a) contacting the sample with a solution comprising the at least one polysaccharide to form a polysaccharide-microvesicle complex; and (b) separating the polysaccharide-microvesicle complex from the solution.

In some embodiments, the sample is contacted with the polysaccharide(s) for a period of 10 minutes to 20 hours, optimally 10 to 30 minutes or 8 to 12 hours.

In some embodiments, the sample is contacted with the solution at a temperature of 2° C. to 37° C., optionally 2° C. to 10° C. or 20° C. to 25° C.

In other embodiments, the polysaccharide-microvesicle complex is separated by subjecting the solution to centrifugal force or by filtering the solution, or a combination thereof. In some embodiments, the centrifugal force is 3,000 g to 20,000 g, optionally about 17,000 g.

In other embodiments, the polysaccharide-microvesicle complex is washed with saline by subjecting the solution to centrifugal force for 5 minutes to 30 minutes, or optionally about 15 minutes.

In other embodiments, the solution is filtered using a filter with a pore size of 0.45 μm to 2.0 μm to isolate the polysaccharide-microvesicle complex.

In other embodiments of the disclosure, one or more polysaccharide bonded or printed to silicons [for example Polydimethylsiloxane (PDMS)] or other surface of microfluidic apparatus to help in the purification of the microvesicles from the sample.

In other embodiments of the disclosure, the body-fluid-type sample is first treated to prepare the sample for the isolation of the microvesicles. To prepare a cleared sample, for example, after a sample is obtained from a subject, the sample is diluted to 2 to 100 times with physiological saline and subjected to centrifugation at about 17,000 g, or filtered with 0.45 μm to 2.0 μm filter paper, to remove unwanted material from the sample. The cleared sample is then subjected to a method of the disclosure for the isolation of the microvesicles.

(III) Methods of Medical Treatment and Diagnosis

The present disclosure also includes methods of treating and/or diagnosing a pathological condition by administering a polysaccharide described in the disclosure to a subject suffering from the condition. The disclosure also includes methods of diagnosing a pathological condition by the isolation of microvesicles from a biological sample.

Accordingly, in one embodiment, there is included a method for the diagnosis of a pathological condition comprising:

(i) obtaining a biological sample from a subject;

(ii) isolating microvesicles from the sample using a method of the present disclosure;

(iii) measuring an amount of microvesicles in the sample;

(iv) comparing the measured amount of microvesicles with a reference value, and if the amount of microvesicles is increased relative to the reference value, identifying the subject as having an increased probability of having the pathological condition.

The reference value used in the diagnosis can be a standard value known to those skilled in the art, or a value measured from a healthy subject or to monitor the progression or regression of the pathological condition relative to the reference value. For example, the reference value can be calculated from a different subject who does not have the pathological condition, and a comparison of the two reference values provides an indication whether the subject has the pathological condition. Alternatively, the reference value can be calculated from the same patient to monitor the progression or regression of the pathological condition relative to the reference value.

In some embodiments, the pathological condition is cancer. If the amount of microvesicles is increased in the sample relative to the reference value, the subject can subsequently be treated with therapies to treat the condition, or prevent the condition. Alternatively, if the amount of biomarkers in the sample is changed (increased or decreased) relative to the reference value, the subject can subsequently be treated with therapies to treat the condition, or prevent the condition. For example, when the pathological condition is cancer and the diagnosis indicates that the subject suffers from cancer, the subject is treated with chemotherapy, radiological therapy, or any other cancer treatment. Examples of biomarkers include, but are not limited to, metabolites, proteins, peptides, DNA, RNA, mRNA, miRNA, LincRNA, misc-RNA, circular-RNA, etc.

In another embodiment, the disclosure also includes a method for the diagnosis of a pathological condition comprising:

(i) obtaining a biological sample from a subject;

(ii) isolating microvesicles from the sample using a method of the present disclosure; and

(iii) detecting and/or measuring:

(a) one or more pathological markers, and/or markers for a particular tissue or cell-type, wherein the presence of the pathological marker in the sample indicates the presence of the condition in the subject; and/or (b) one or more healthy normal markers for a particular tissue or cell-type, wherein the absence, or decrease compared to a reference value, of the healthy normal marker in the sample indicates the presence of the pathological condition in the subject. Examples of biomarkers include, but are not limited to, metabolites, proteins, peptides, DNA, RNA, mRNA, miRNA, LincRNA, misc-RNA, circular-RNA, etc.

In one embodiment, there is included a method for the diagnosis of a pathological condition comprising:

(i) obtaining a biological sample from a subject;

(ii) isolating microvesicles from the sample using a method of the present disclosure;

(iii) detecting one or more pathological markers, such as a cancer biomarker, and/or markers for a particular tissue or cell-type, wherein the presence of the pathological marker in the sample indicates the presence of the condition in the subject.

The present disclosure also includes a method of identifying a biomarker associated with a pathological condition, as a result of the biomarker being present in the microvesicle. Accordingly, in one embodiment, the method includes

(i) isolating microvesicles in a biological sample obtained from a subject by using a method of the present disclosure;

(ii) screening the contents of the isolated microvesicles for biomarkers. It will be understood that a biomarker is a molecule that allows for the differential detection of healthy subjects and pathological conditions. For example, in one embodiment, a cancer, or infection specific, mRNA, miRNA, LincRNA, mis-RNA or circular-RNA, protein, peptide, DNA or any other component is detected in isolated microvesicles from subjects having the pathological condition but is not present in the microvesicles of a healthy subject.

In some embodiments, the pathological condition is cancer. Comparing the molecular difference between the samples of a healthy subject and the subject suspected of having for example cancer, for example by the detection of one or more biomarkers for cancer, relative to the reference value, indicates the presence of cancer in the subject, and therefore can subsequently be treated with therapies to treat the condition, or prevent the condition. For example, when the pathological condition is cancer and the diagnosis indicates that the subject suffers from cancer, the subject is treated with chemotherapy, radiological therapy, or any other cancer treatment.

In some embodiments, the pathological condition is an infection (for example infections caused by viruses, bacteria, fungi, protozoa, multicellular organisms, and aberrant proteins known as prions). Comparing the molecular difference between the samples of a healthy subject and the subject suspected of having for example an infection, for example by the detection of one or more biomarkers for the infection, relative to the reference value, indicates the presence of the infection in the subject, and therefore can subsequently be treated with therapies to treat the infection, or prevent an infection. For example, when the pathological condition is bacterial or viral infection and the diagnosis indicates that the subject suffers from infection, the subject is treated with conventional treatment.

In other embodiments of the disclosure, there is also included development of an assay for detecting a pathological condition in a subject, comprising,

(i) obtaining a biological sample from the subject;

(ii) isolating microvesicles from the sample using a method of the present disclosure;

(iii) measuring one or more: (a) biomarkers for the pathological condition, (b) other pathological markers; and/or (c) markers for a particular tissue or cell-type,

(iv) comparing the level of markers defined in step (iii) to a reference value, wherein if the level of markers is increased or decreased relative to the reference value, identifying the subject as having an increased probability of having the pathological condition.

The present disclosure also includes a method for determining if a subject, suffering from a pathological condition, is responsive to a therapy for treatment of the condition, comprising

(i) performing an assay for detecting a pathological condition in a subject as defined above;

(ii) subsequently administering the therapy to the subject;

(iii) performing a second assay as described above in a second biological sample obtained from the subject, wherein a decrease in the level of markers in the second biological sample indicates the subject is responsive to the therapy.

In other embodiments, the pathological condition is cancer.

The present disclosure also includes a method for determining if a subject, suffering from a cancer, is responsive to chemotherapy, radiological therapy, or any other cancer treatment, comprising,

(i) performing an assay for detecting a pathological condition in a subject as defined above, wherein the pathological condition is cancer;

(ii) subsequently administering the chemotherapy, radiological therapy, or any other cancer treatment to the subject;

(iii) performing a second assay as described above in a second biological sample obtained from the subject, wherein a decrease in the level of cancer markers and/or increase in normal healthy biomarkers in the second biological sample indicates the subject is responsive to the therapy.

In other embodiments there is included a method for determining if a subject, suffering from a pathological condition, is responsive to a therapy for treatment of the condition, comprising,

(i) isolating a first amount of microvesicles in a first biological sample obtained from a subject using a method of the present disclosure;

(ii) measuring for one or more markers, such as a cancer biomarker, in the microvesicles from the first biological sample;

(iii) subsequently administering the therapy to the subject;

(iv) isolating a second amount of microvesicles in a second biological sample from the subject using a method of the present disclosure;

(v) measuring for the one or more markers, such as a cancer biomarker, in the microvesicles from the second biological sample,

wherein a difference in the one or more markers, such as a cancer biomarker, in the second amount of microvesicles compared to the values of the first amount of microvesicles in the first biological sample indicates the degree of responsiveness to the therapy in the subject.

In other embodiments, there is also included a method for the treatment of a pathological condition comprising administering to a subject in need thereof a therapeutically effective amount of a polysaccharide to sequester or remove the level of microvesicles associated with the condition in the subject. For example, when the pathological condition is cancer, and subjects suffering from cancer have an increased level of pathological microvesicles or cancer specific microvesicles. Administering one or more polysaccharides or applied as external skin patch in accordance with the present disclosure results in the neutralization of such microvesicles in vivo thereby causing a reduction in the levels of the pathological microvesicles in the subject.

In other embodiments of the disclosure, there is also included an assay for food safety tastings, such as dairy and meat products. Pathogenic, infectious and other disease conditions produce differing profiles of microvesicles. Accordingly, by isolating the microvesicles from the dairy and meat samples using a method of the present disclosure, wherein a differing molecular or physical difference in the dairy and meat sample compared to the control (safe) sample indicates whether the sample meets safety standards for further processing and consumption.

In one embodiment, there is included an assay for detecting a pathological condition in, or contamination of, a food product, comprising:

(i) obtaining a sample from the food product and/or source animal (for example cattle, poultry and pigs);

(ii) isolating microvesicles from the sample using a method of the present disclosure;

(iii) detecting one or more pathological markers, such as a pathogenic, infectious or other disease condition, wherein the presence of the pathological marker in the sample indicates the presence of the condition in the sample.

In one embodiment, there is included an assay for detecting a pathological condition in framed animals, birds and fish, comprising:

-   -   (i) obtaining a sample from the source animal (for example         cattle, poultry, pigs, fish);     -   (ii) obtaining a standard non-pathogenic sample from a healthy         animal;     -   (ii) isolating microvesicles from the sample using a method of         the present disclosure;     -   (iii) detecting one or more pathological markers, such as a         pathogenic, infectious or other disease condition, wherein the         presence of the pathological marker in the sample indicates the         presence of the condition in the sample.

For example, in one embodiment, a pathological marker, such as mRNA, miRNA, LincRNA, mis-RNA or circular-RNA, proteins, glycoproteins or other component is detected in isolated microvesicles from samples having the pathological condition but is not present in the microvesicles of a healthy samples.

Although the disclosure has been described in conjunction with specific embodiments thereof, if is evident that many alternatives, modifications and variations will be apparent to those skilled in the art. Accordingly, it is intended to embrace all such alternatives, modifications and variations that fall within the spirit and broad scope of the appended claims. In addition, citation or identification of any reference in this disclosure shall not be construed as an admission that such reference is available as prior art to the present disclosure.

EXAMPLES

The operation of the disclosure is illustrated by the following representative examples. As is apparent to those skilled in the art, many of the details of the examples may be changed while still practicing the disclosure described herein.

Materials and Methods

Samples from Cell Lines:

Immortalized normal mammary epithelial cells (MCF-10A), non-aggressive breast cancer cell line (MCF7 and SKBR3) and aggressive breast cancer cell line (MDA-MB-231) were grown in bioreactor (from CELLine, used CELLine 1000) in 37° C. with 5% CO₂. Thirty million cells were resuspended in 15 ml of microvesicle free FBS (Fetal bovine serum) media. Microvesicle free FBS was prepared by ultra centrifuging FBS at 100,000 to 120,000 g for 2 hours and collecting the FBS without touching the microvesicles pellet. The above cell suspension was used to seed the lower compartment of the bioreactor and 500 ml of the regular media used in the upper compartment. The two compartments separate the bioreactor into a medium and cell compartment by a 10 kDa semi-permeable membrane which allows a continuous diffusion of nutrients into the cell compartment with a concurrent removal of any inhibitory waste product. The microvesicles cannot pass through this membrane and media enriched in cell and cell derived material were harvested regularly from the lower chamber (called conditioned media) with continuous feeding both the chambers. This method was used for the cell lines described in Tables 1-3 and FIGS. 1B, 1C, 2, 4, 6, 7, 8 and 9.

Plasma Samples from Human Subjects:

The clinical samples from subjects were collected as per clinical and ethical approval of Atlantic Cancer Research Institute. The plasma was diluted 5 or 10 times with saline and used for isolation of microvesicles as described in the method of this disclosure. This method was used for the samples shown in FIGS. 1A, 5 and 10.

Isolation of Microvesicles by Ultracentrifugation:

The conditioned media from tissue culture bioreactor were collected and subjected to 17,000 g centrifugation for 15 minutes at 4° C. The ‘cleared’ supernatant was used for ultra centrifugation. The cleared liquid was overlaid onto 30% sucrose cushion and centrifuged at 100,000 to 120,000 g for two hours. The bottom ring was aspirated using a Pasteur pipette into a new ultracentrifuge tube and diluted 5 to 10 times with PBS (phosphate buffered saline) and centrifuged again at 100,000 to 120,000 g for two hours. The microvesicles pellet were collected and stored for protein and/or RNA isolation. Examples shown in Tables 1-3 and FIGS. 2 and 4, as comparative conventional method of isolating microvesicles.

Atomic Force Microscopy:

Mechanically cleaved Muscovite Mica was used to produce clean, atomically flat surfaces which have strong electrostatic interactions and model substrate for adsorption of biological materials. Microvesicles isolated by method in this disclosure were diluted and spread on to freshly cleaved mica and dried with gentle blow of nitrogen. The microvesicles absorbed mica slides were immediately analyzed for structural studies with Atomic Force Microscopy. Examples shown in FIG. 1C.

Immunofluorescence Microscopy:

The microvesicles were pre-stained with PKH67 (green) followed by co-incubated with new target cells in microvesicle free media for an indicated period followed by immuno-fluorescence staining procedure. The cells were fixed with 3.7% formalin, block with 1% bovine serum albumin and incubated with antibodies (for example Golgin and LAMP-1). The secondary antibody conjugated with Alexa Fluor fluorescent dyes were subsequently incubated on to the cells and nucleus was stained blue with DAPI. The permanently mounted slides were photomicrographed using a confocal microscope. Examples shown in FIGS. 9 and 10.

Transmission Electron Microscopy:

The dispersed microvesicles were deposited onto formvar/carbon-coated EM grids and fixed with 3.7% formalin followed by two washes with PBS and stained with 2% uranyl acetate. The dried grids were then viewed. Examples shown in FIG. 1B.

Nanoparticle Tracking Analysis:

The dispersed microvesicles were diluted to 100 to 1000 times in PBS for this analysis. Nanoparticle tracking analysis was done using LM10 unit and software v2.3 (Nanosight, Amesbury, UK). Hydration-sphere-equivalent sizes are displayed as particle size distribution with their relative abundance. Examples shown in FIG. 1A.

Example 1 Sample Preparation

Conditioned Media from Bioreactor:

As described in the Materials section, conditioned media were regularly harvested for subsequent isolation of microvesicles. The conditioned media was subjected to centrifugation (800 g for 10 minutes at room temperature or 4° C.) to remove the cells and cellular debris. The samples were stored at 4° C. with 15 μl of protease inhibitor cocktail Ill (from EMD Millipore) in 1 ml of media. The supernatants were then subjected to another round of centrifugation (17,000 g for 15 minutes at 4° C.) to remove finer cellular partials. Examples shown in Table 1-4 and FIGS. 1B, 1C, 2, 4, 6, 7, 8 and 9.

Conditioned Media from Normal Cell Culture:

Cells were grown to 80 to 90% confluency in their respective media. The cells were then rinsed 3 times with serum-free media and incubated at 37° C. for 4 hours. The conditioned media was subjected to centrifugation (800 g for 10 minutes at room temperature or 4° C.) to remove the cells and cellular debris. The samples were stored at 4° C. with 15 μl of protease inhibitor cocktail III (from EMD Millipore) in 1 ml of media. The supernatants were then subjected to another round of centrifugation (17,000 g for 15 minutes at 4° C.) to remove finer cellular partials. Examples shown in FIG. 3.

Sample from Subjects:

Human plasma samples were collected as per clinical procedures and approvals. The plasma samples were archived at −80° C. in 0.5 or 1.0 ml aliquots. The fresh or thawed archived plasma were diluted to 5-10 times in PBS (phosphate buffered saline). The diluted plasma was subjected to centrifugation (1500 g for 10 minutes at room temperature or 4° C.) to remove the cells and cellular debris. The supernatants were stored at 4° C. with 15 μl of protease inhibitor cocktail III (from EMD Millipore) per 1 ml. The supernatants were then subjected to another round of centrifugation (17,000 g for 15 minutes at 4° C.) to remove finer cellular partials or particles formed by globular proteins. Examples shown in FIGS. 1A, 1B, 1C, 5 and 10.

Example 2 Isolation of Microvesicles with Polysaccharide

The cleared samples from Example 1 were then subjected to a hyaluronic acid dextran, dextran sulfate, chondroitin sulfate A, chondroitin sulfate B heparin sulfate.

(i) Long Period Contacting:

20 μg to 100 μg polysaccharide was added into 1 ml of cleared sample and rotated end-to-end overnight at 4° C. (13 to 20 hours). The mixture was subjected to centrifugation (17,000 g for 15 minutes at 4° C.) to precipitate polysaccharide-microvesicles complexes. The palette were transferred to a fresh tube with 1 ml of PBS and again subjected to centrifugation (17,000 g for 15 minutes at 4° C.) to wash. The palette was washed again with PBS and used for different analysis. This method was used for the results shown in the following tables and figures:

-   -   Table 1 shows purification/enrichment of microvesicles from         conditioned media of Breast cancer cell line MDA-MB-231. The         table shows a comparative total proteomic data analysis of         isolated microvesicles using hyaluronan, conventional         ultracentrifugation (UCF) and a commercially available kit (Exo)         from breast cancer cell-line (MDA-MB-231) in an embodiment of a         method of the disclosure. The cleared conditioned media was         incubated with polysaccharides and enriched microvesicles were         analysed to identify the proteins in those microvesicles my         mass-spectrometric analysis;     -   Table 2 shows p-values of cellular component Ontology analysis         using proteomic data analysis from Table-1 of isolated         microvesicles using polysaccharides (in an embodiment of a         method of the disclosure), conventional ultracentrifugation         (UCF) and a commercially available kit (Exo) from breast cancer         cell-line (MDA-MB-231) in an embodiment of a method of the         disclosure;     -   Table 3 shows a comparative numbers of miRNAs (using next         generation sequencing platform) from isolated microvesicles,         conventional ultracentrifugation (UCF) and a commercially         available kit (Exo) from breast cancer cell-lines (MCF7 and         MDA-MB-231) in an embodiment of a method of the disclosure;     -   Table 4 shows differential protein content of purified/enriched         microvesicles from conditioned media of normal breast cell line         MCF10A and Breast cancer cell line MCF7. The table shows a         percent of the total protein identified by mass spectrometry         analysis of isolated microvesicles using hyaluronan, in an         embodiment of a method of the disclosure;     -   FIG. 1A demonstrates that polysaccharides can enrich or purify         microvesicles from diluted (in saline) and cleared patients         plasma in an embodiment of a method of the disclosure. The         figure shows particle size distribution (using nanoparticle         tracking analysis) of the isolation of microvesicles from         healthy subject and breast cancer patient's plasma.     -   FIG. 1B demonstrates that polysaccharides can enrich or purify         microvesicles from diluted (in saline) and cleared patients         plasma, in an embodiment of a method of the disclosure. The         figure shows transmission electron micrographs demonstrating the         isolation of microvesicles from a breast cancer patient's plasma         and plasma from healthy.     -   FIG. 1B also demonstrates enrichment of microvesicles from cell         line conditioned media, in an embodiment of a method of the         disclosure. The figure shows transmission electron micrographs         demonstrating the isolation of microvesicles from a breast cell         lines (normal and cancerous).     -   FIG. 1C shows the purification/enrichment of microvesicles from         conditioned media of Breast cancer cell line SKBR3, in an         embodiment of a method of the disclosure. The cleared         conditioned media was incubated with polysaccharides and         enriched microvesicles were visualized by Atomic Force         Microscopy. No microvesicles were enriched where no PS was         added. Here the PS used was hyaluronic acid.     -   FIG. 1C also demonstrates that polysaccharides can enrich or         purify microvesicles from diluted (in saline) and cleared         patients plasma, in an embodiment of a method of the disclosure.         The figure shows atomic force micrographs demonstrating the         isolation of microvesicles from a breast cancer patient's plasma         and plasma from healthy.     -   FIG. 2 shows a Venn diagram with examples of intact cellular         mRNAs found in microvesicles isolated by both conventional         ultracentrifugation and microvesicles isolated from different         breast cancer cell lines (using micro-array analysis), in an         embodiment of a method of the disclosure.     -   FIG. 4 shows an immuno-blot analysis of cleared conditioned         media from breast cancer cell lines, in an embodiment of a         method of the disclosure. Heat shock protein is a marker for         microvesicles, which are conserved in enriched microvesicles         using the method of the disclosure. Enriched/isolated         microvesicles were visualized by Immuno-blotting with Anti-HSP70         antibody (left) and Corresponding protein gel (right). Lane 1         shows 5% of the total conditions media input; lane 2 shows         microvesicles enriched by a commercial kit: Exoquick; and lane 3         shows microvesicles isolated by polysaccharides.     -   FIG. 5 is a Coomassie Blue stained protein-Polyacrylamide gel         electrophoresis photographs demonstrating the isolation of         microvesicles from breast cancer and prostate cancer patients'         plasma, in an embodiment of a method of the disclosure. 50         micro-liter of plasma diluted 10 times with saline was cleared         and used to enrich microvesicles. One-third of the total extract         was loaded for the protein gel.     -   FIG. 6 shows an immuno-blot analysis of cleared conditioned         media from breast cancer cell line (MCF7) incubated with         different polysaccharides, in an embodiment of a method of the         disclosure. Heat shock protein is a marker for microvesicles,         which are conserved in enriched microvesicles using the method         of the disclosure. Enriched/isolated microvesicles were         visualized by Immuno-blotting with Anti-HSP90 antibody (top) and         Corresponding total protein gel (bottom).

(ii) Short Period Contacting:

Twenty to 100 μg/ml of polysaccharides were added into 1 ml of cleared sample and mixed by inverting end-to-end for 20 times and incubated at 37° C. or room temperature for 10 to 30 minutes. The mixture was subjected to centrifugation (17,000 g for 15 minutes at room temperature) to precipitate polysaccharide-microvesicles complexes. The palette were transferred to a fresh tube with 1 ml of PBS and again subjected to centrifugation (17,000 g for 15 minutes at room temperature) to wash. The palette was washed again with PBS and used for analysis. This method was used for the results shown in the following figures:

-   -   FIG. 7 shows an immuno-blot analysis of cleared conditioned         media from breast cancer cell line (MCF7) and enriched         microvesicles in an embodiment of a method of the disclosure.         Enriched/isolated microvesicles using different polysaccharides         were analysed by Immuno-blotting with Anti-Glyceraldehyde         3-phosphate dehydrogenase antibody (top) and corresponding total         protein gel (bottom).     -   FIG. 8 is a malignant transformation assay using non-transformed         mouse fibroblasts in soft agar demonstrating that isolated         microvesicles from normal (MCF10A), less aggressive (MCF7) and         more aggressive (MDA-MB-231) cell lines, in an embodiment of a         method of the disclosure. The isolated microvesicles have         differential capabilities of transforming a normal cell to         cancerous cell. NIH3T3 cells are non-transformed fibroblast mice         cells and make colonies in soft-agar when they are induced to         oncogenic transformation. Microvesicles from conditioned media         were for 3 times and let grow for 18 days. Microvesicles free         defined stem-cell media was used for all experiments. Out of the         three breast cancer cell lines, MDA-MB-231 is the most         aggressive and has metastatic potential. Isolated microvesicles         conserved their transformation potential, and therefore, the         degree of cancer aggressiveness could be measured with the         method of the disclosure.

Example 3 Biotin Avidin System

Biotinylated Hyaluronic acid (bHA) was prepared following published protocol¹⁵. Conditioned media from normal cell culture were used. The cleared media were incubated with bHA (1 μg/ml of media) and rotated end-to-end overnight at 4° C. The mixture was incubated with 20 μl of Dynabeads MyOne Streptavidin C1 (Life Technology) and washed 3 times with PBS in separate tubes on magnetic stand. These beads-bHA-microvesicles complex were used to isolate miRNAs/small RNAs using mirPremier microRNA Isolation Kit (Sigma) and subjected to PCR identification of specific miRNA using protocol described in FIG. 3B. FIG. 3 is an micro-RNA analysis to demonstrate identification of indicated miRNAs were done from biotinylated polysaccharide-microvesicles complexes using the indicated molecular analysis, in an embodiment of a method of the disclosure. In this Figure, the hyaluronic acid was Biotinylated and captured by Avidin-beads.

Example 4 RNA Purification from Isolated Microvesicles and Microarray Analysis

The RNA was prepared combining Trizol (Invitrogen) and Qiagen RNeasy kit according to the manufacturers' protocol. Isolated microvesicles according to this disclosure were suspended in Trizol and stored at −80° C. until RNA was isolated. For RNA isolation the frozen microvesicles+Trizol tubes were thawed and 200 μl chloroform was added per ml Trizol used. The tubes were shaken vigorously for 20 sec, then allowed to sit at room temperature for 2-3 min, span at 12,000×g for 15 min at 4 C and carefully removed aqueous phase (top) and transfer to new sterile RNase-free tube (1.5 ml tube) for Qiagen RNeasy kit. The total RNA isolated from microvesicles were used to amplify mRNAs only and subsequently those cDNAs were labeled with Amino Allyl Message Amp ii aRNA Kit from Ambion with both Alexa Fluor 555 and Alexa Fluor 647 for each samples (from Invitrogen). The microarray used for these experiments were printed by Atlantic Microarray Facility with 38,000 spots per slide representing protein coding sequences of entire human genome. Hybridization was performed using Tecan Hyb station. Scanning and analysis were done with Axon GenePix4000B scanner and Acuity 4.0 software respectively. Examples shown in FIG. 2.

Example 5 Mass Spectrometry (MS) Analysis Isolated Microvesicles by In-Gel Digestion

Microvesicles were isolated from cell culture conditioned media; in an embodiment of a method of the disclosure Total microvesicles were boiled in 4× lamilli buffer and run on SDS-PAGE. The gel was stained with standard Coomassie Brilliant Blue. The destained gel was cut in 12 equal pieces per lane from top to bottom of the gel in clean hood and collected individually. The gel-pieces were dehydrated using 100% acetonitrile, treated with reducing agent (dithiothreitol), followed by treatment with iodoacetic acid and digested with trypsin over-night. The digested peptides were extracted in 50% acetonitrile/50% acetic acid and evaporated in vacuum centrifuge. The evaporated samples were adjusted to 1% acetic acid for loading in MS.

The protein identification platform consists of an Ultimate 3000 nano-liquid chromatograph (Dionex, Sunnyvale, Calif.) coupled to a linear quadrupole ion trap mass spectrometer (Thermo-Fisher, San Jose, Calif.) via a nanoelectrospray emitter. Small chromatography columns (75 μm×10.5 cm) are packed with 5 um particles into a commercial nanospray tip (New Objective, Woburn, Mass.) with a 15 um spray tip. Typically 15 microliters of peptide extracts are loaded onto a short C18 trap column at 20 μL/min and then eluted with a water/acetonitrile solvent gradient through a second (analytical) C18 column at a flow rate of 400 nL/min. During the chromatographic elution, the mass spectrometer is operated in “data-dependent acquisition” (i.e., DDA) mode whereby the mass spectrometer collects a first order mass spectrum and uses software to target the five most abundant ions in the spectrum for sequencing by collision induced dissociation (CID). Once a peptide mass has been selected for fragmentation twice, dynamic exclusion of the intact peptide mass is implemented for a duration of 30 seconds. Following a 70 minute chromatographic run per sample, the data is submitted to Bioworks for peptide matching and ultimately protein identification. Bioworks uses the Sequest algorithm to match the acquired peptide mass and fragmentation spectra to an “in silico” tryptic digest of the public NCBI non-redundant protein database. The results from the Sequest search are further processed using Scaffold for statistical analysis. Example shown in Table 1, 2 and 4.

Example 6 Western Blots

The protein samples isolated from microvesicles and other sources were boiled for 10 minutes and loaded on SDS-PAGE. The gel was transferred onto nitrocellulose membranes and was blocked for 1-2 h in 10% milk in PBS plus 0.1% Tween 20 (PBS-T), treated with primary antibody overnight at 4° C. in the blocking solution, washed three times with PBS-T, and finally incubated with horseradish peroxidase-conjugated secondary antibodies. The image was developed using a luminol-based chemiluminescence reaction and photographed. Example shown in FIGS. 4, 6 and 7.

Example 7 Detection of miRNAs from Purified Microvesicles

Conditioned media from breast cancer cell line MCF-7 was used for purification of microvesicles with Biotinylated polysaccharides with avidin-beads according to an embodiment of a method of the disclosure. Small RNAs from microvesicles was isolated using Sigma miRNA kit and was polyadenylated with Poly(A) Polymerase and Reverse transcribed using poly-T-adopter primers with reverse transcriptase. The resulted cDNAs of miRNA was PCR amplified with one universal primer (specific to the adaptor) and a forward miRNA specific primer and visualized by Polyacrylamide gel electrophoresis. Examples shown in FIG. 3.

Example 8 Anchorage-Independent Transformation by Microvesicles Derived from Different Breast Cancer Cell-Lines

mouse non-transformed fibroblast NIH3T3 cells were used to determine transformation induced cellular growth in semisolid medium. This assay indicate whether any stimuli, genetic and/or epigenetic changes applied to these cells transform them to cancerous cells and thus acquire anchorage-independent growth behavior in semisolid medium like agar. Low melting agarose (Invitrogen) was autoclaved in water at 1.2% (WN) and kept at 40° C. in a water bath. Medium of 2× concentration was preheated in the same bath. In a 12-well plate, 0.5 ml/well agarose/medium mixture in 1:1 (0.6% agarose final) was layered and left to solidify at room temperature for 40 min. Microvesicles isolated using method describe in this disclosure from 1 ml of conditioned media from different cell lines were incubated with 0.25 ml of media with 10⁴ NIH3T3 cells for 30 min at 37° C. followed by mixing that with 0.6% agarose media and layered onto solidified 0.6% agarose layer and kept at room temperature for 1 hour. The semisolid medium with cells and microvesicles were overlaid with 1 ml of medium and incubated at 37° C. for 3 weeks, changing overlaying medium with same amount of media with microvesicles isolated from indicated cells at every 3^(rd) days for 3 times and photographed them on 18^(th) day. Example shown in FIG. 8.

Example 9 Isolation of Microvesicles from Breast Cancer Sample

Microvesicles were isolated according to an embodiment of a method of the disclosure. Patients plasma (25 μl) was diluted 10 times with PBS (or 0.5 ml of conditioned media) and cleared either by spinning at 17,000 g at 4° C. for 15 minutes or by 0.22 μm filters. The cleared plasma samples were incubated with hyaluronan (100 μg per ml of sample) either for 1 hour at room temperate or 4° C. overnight with end-to-end oration. The microvesicles were pelleted spinning at 17,000 g at 4° C. for 15 minutes followed by two washes with PBS. The pellets were digested with 0.1 μg of hyaluronidases (HAase) for overnight followed by proteaseK digestion for 2 hours at 37° C. to disperse to individual microvesicles for nanoparticle tracking analysis (NTA), transmission electron microscopy (TEM) and atomic force microscopy (AFM) as shown in FIGS. 1A, 1B and 1C. NTA profiles of microvesicles shows a major peak representing the mode size and the bar scales of the TEM are 100 nm. The diameter of each MV circled (white) are presented for the AFM. The sizes of the microvesicles are comparable to published data.

Example 10 Comparative Proteomic Analysis of Breast Cancer Microvesicles from MDA-MB-231 Breast Cancer Cell Line

Shown in Table 1 is a proteomic analysis of breast cancer microvescles with different isolation methods from indicated breast cancer cell line conditioned media. The isolation methods are as follows: conventional ultracentrifugation method (UCF), with hyaluronan (HA) in accordance with the present disclosure, and commercially available ExoQuick (Exo). Representative proteomic data of microvesicles extracted from MDA-MB-231 with different methods are shown here. The number of unique peptides from a protein are indicated in this table.

Table 2 shows a Gene Ontology analysis of the proteins of Table 1 to associate the cellular components using ToppGene Suite. Table 2 indicatesthe p-value for the specific cellular vesicles. Proteomic data of microvesicles extracted from MDA-MB-231 conditioned media obtained from Table-1 using the indicated methods were used for cellular component Ontology analysis. The proteomic data was extracted for 100% protein identification probability for Ontology analysis. Conventional ultracentrifugation method (UCF), hyaluronan (HA), commercially available ExoQuick (Kit) and Vn96 were compared here. The p-value indicates the statistical significance of the proteome of microvesicles extracted using different methods. The highly significant cellular components indicate the ‘proteomes’ were originated from extracellular microvesicles or exosomes.

Table 4 shows differential protein content of purified/enriched microvesicles from conditioned media of normal breast cell line MCF10A and Breast cancer cell line MCF7. The table shows a percent of the total protein identified by mass spectrometry analysis of isolated microvesicles using hyaluronan, in an embodiment of a method of the disclosure;

Example 11 Comparative Transcriptomics Analysis of Breast Cancer Hyaluronan-Microvesicles Complexes

Comparison of microvesicle isolation methods from indicated breast cancer cell line conditioned media: ultracentrifugation method with hyaluronan (HA), according to an embodiment of a method of the disclosure. Total RNA from indicated microvesicles was isolated and subjected to cDNA microarray analysis (38K Human Oligo microarray, Atlantic Microarray Facility). The numbers of full-length mRNAs are shown in Venn diagram of FIG. 2.

Comparison of microvesicle isolation methods from indicated breast cancer cell lines' conditioned media: ultracentrifugation and hyaluronan (HA) methods: miRNA sequences from microvesicles isolated from 2 different breast cancer cell lines (MCF7 and MDA-MB-231) using ultracentrifugation (UCF), a commercial kit (Exo) and method of the disclosure using Hyaluronan (HA). The sequencing were performed using ion-torrent platform of next-generation sequencing and aligned the reads on human genome Hg19 according to their size and miRNAa were identified using either human precursor miRNA annotation (mirBase V19), or human transcripts Hg19. The numbers shown in Table 3 represent number of ‘reads’ or match with the particular miRNA sequence in the samples.

Example 12 Enrichment of Microvesicles from Conditioned Media Using Different Polysaccharides

1.5 ml of conditioned media from breast cancer cell line MCF7 was cleared from cellular debris by centrifugation at 5000×g for 10 minutes followed by filtration through 0.2 μm syringe filters. 100 μg/ml of each indicated polysaccharide, according to an embodiment of a method of the disclosure, as shown in FIG. 6 was mixed with the conditioned media and incubated overnight with end-to-end rotation. The mixture was centrifuged at 17,000×g for 15 minutes at 4° C. The precipitates were washed 3 times with PBS. The right most lane: 300 kDa cut demonstrates a spin-filter was used to remove any proteins less than 300 kDa. For all experiments, low protein binding plastic-ware was used. The precipitates were subjected to Western blot analysis for HSP90 as shown in FIG. 6, an abundant marker of extracellular microvescicles or exosomes, clearly demonstrating isolation of the microvesicles.

Example 13 Enrichment of Microvesicles from Conditioned Media Using Different Polysaccharides

1.5 ml of conditioned media from breast cancer cell line MCF7 was cleared from cellular debris by centrifugation at 5000×g for 10 minutes followed by filtration through 0.2 μm syringe filters. 66 μg/ml of each indicated polysaccharide, according to an embodiment of a method of the disclosure, as shown in FIG. 7 was mixed with the conditioned media and incubated 25° C. with end-to-end rotation for 30 minutes. The mixture were centrifuged at 17,000×g for 15 minutes at 25° C. The precipitates were washed 3 times with PBS. For all experiments, low protein binding plastic-ware were used. The Precipitates were subjected to Western blot analysis for glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as shown in FIG. 7, an abundant marker of extracellular microvescicles or exosomes.

Example 14 Biologically Active Microvesicles—Soft-Agar Anchorage-Independent Growth Assay with NIH/3T3 Cells

NIH/3T3 cells are murine non-transformed fibroblasts which make colonies in soft-agar only when they are induced to oncogenic transformation. Microvesicles isolated in accordance with the above examples using hyaluronan (HA) from indicated cells (according to an embodiment of a method of the disclosure) were added onto target NIH/3T3 cells in soft-agar every 3rd day for 3 times and grown for 18 days (top panel), as shown in FIG. 8. Defined Stem cell media was used as MV free medium. The cell-embedded soft-agar (top panel) were pulverized with 1 ml pipette-tips and further inoculated in soft-agar, without any newly added microvesicles (in Stem cell medium) for 3 weeks (lower panel of FIG. 8). The results indicated that the more invasive breast cancer line (MDA-MB-231) derived Hyaluronan-Microvesicles transformed NIH/3T3 cells permanently (colonies) and can form colonies on soft-agar even after 40 days.

Example 15 Biologically Active Microvesicles Internalized into Host Cell

Internalization Assay:

(A) Hyaluronan-microvesicles complex (HA-MVs) isolated from indicated breast cancer cell-lines' conditioned media using hyaluronan (HA), according to an embodiment of a method of the disclosure, as shown in FIG. 9A, were treated with or without hyaluronidases (HAase) or trypsin. The pre-stained HA-MVs co-incubated with target MCF-10A cells in MV free media for 48 hours followed by immuno-fluorescence microscopy. HAase treatment did not show any difference in internalization but significantly reduced for trypsinized HA-MVs derived from MCF-10A cells in comparison to the HA-MVs from MDA-MB-231 cells. Golgin is a marker for Golgi body and LAMP-1 is a marker for lysosome and exocytosis pathways. As shown in FIG. 9B, a similar internalization assay was performed as in (A) where HA-MVs were co-incubated with MCF-10A target cells for almost 100 hours. A network of green membrane tubules originating from HA extracted microvesicles' PKH67 (green) stained lipid (resembling endoplasmic reticulum, ER) were observed, which indicates that the microvesicles were internalized and also integrated into components of cytoplasm (EpCAM is cell surface marker).

Example 16 Biologically Active Microvesicles Internalized into Human Host Cell

A similar internalization assay was performed as in Example 15 where HA-MVs from indicated plasma from subjects (as shown in FIG. 10) with or without breast cancer were isolated using hyaluronan (HA), according to an embodiment of a method of the disclosure. The lipids were stained with PKH67 (green) and co-incubated with indicated target cells for 48 hours. We used 25 μl of plasma dilute 10 times with PBS and then subjected to hyaluronan mediated MV precipitation. One tenth of the total extracted HA-MVs were co-incubated with target cells. FIG. 10 shows that the microvesicles were internalized into the cells.

TABLE 1 Comparative Proteomic Analysis of Isolated Breast Cancer Microvesicles Number of unique peptides #

1 Serum albumin OS = Bos taurus GN = ALB PE = 1 SV = 4 32 23 58 2 Trypsin OS = Sus scrofa PE = 1 SV = 1 10 11 13 3 Fibronectin OS = Homo sapiens GN = FN1 PE = 1 SV = 4 42 57 186 4 Galectin-3-binding protein OS = Homo sapiens GN = LGALS3BP PE = 1 SV = 1 35 9 30 5 Actin-5C OS = Drosophila melanogaster GN = Act5C PE = 1 SV = 4 16 13 19 6 Keratin, type II cytoskeletal 8 OS = Homo sapiens GN = KRT8 PE = 1 SV = 7 0 0 0 7 Histone H2A type 1-D OS = Homo sapiens GN = HIST1H2AD PE = 1 SV = 2 3 3 20 8 Alpha-2-macroglobulin OS = Bos taurus GN = A2M PE = 1 SV = 2 32 0 0 9 Alpha-enolase OS = Homo sapiens GN = ENO1 PE = 1 SV = 2 10 18 23 10 Vitamin D-binding protein OS = Bos taurus GN = GC PE = 2 SV = 1 0 0 0 11 Pyruvate kinase isozymes M1/M2 OS = Homo sapiens GN = PKM PE = 1 SV = 4 5 10 15 12 Heat shock protein HSP 90-alpha OS = Bos taurus GN = HSP90AA1 PE = 2 SV = 3 0 4 8 13 Glyceraldehyde-3-phosphate dehydrogenase OS = Homo sapiens GN = GAPDH 5 4 16 14 Keratin, type I cytoskeletal 18 OS = Homo sapiens GN = KRT18 PE = 1 SV = 2 0 0 0 15 Keratin, type II cytoskeletal 1 OS = Homo sapiens GN = KRT1 PE = 1 SV = 6 5 10 7 16 Keratin, type I cytoskeletal 19 OS = Homo sapiens GN = KRT19 PE = 1 SV = 4 0 0 0 17 Phosphoglycerate kinase 1 OS = Homo sapiens GN = PGK1 PE = 1 SV = 3 6 15 20 18 Keratin, type II cytoskeletal 5 OS = Homo sapiens GN = KRT5 PE = 1 SV = 3 0 0 0 19 L-lactate dehydrogenase A chain OS = Homo sapiens GN = LDHA PE = 1 SV = 2 5 8 10 20 Alpha-2-HS-glycoprotein OS = Bos taurus GN = AHSG PE = 1 SV = 2 5 4 4 21 Vimentin OS = Pan troglodytes GN = VIM PE = 2 SV = 4 0 17 16 22 Filamin-A OS = Homo sapiens GN = FLNA PE = 1 SV = 4 0 0 0 23 Transforming growth factor-beta-induced protein ig-h3 OS = Homo sapiens G 0 0 0 24 Filamin-B OS = Homo sapiens GN = FLNB PE = 1 SV = 2 9 2 4 25 Keratin, type I cytoskeletal 10 OS = Homo sapiens GN = KRT10 PE = 1 SV = 6 5 7 4 26 Alpha-1-antiproteinase OS = Bos taurus GN = SERPINA1 PE = 1 SV = 1 4 0 0 27 Annexin A2 OS = Homo sapiens GN = ANXA2 PE = 1 SV = 2 13 19 11 28 Thrombospondin-1 OS = Homo sapiens GN = THBS1 PE = 1 SV = 2 0 0 21 29 Histone H2B type 1-C/E/F/G/I OS = Homo sapiens GN = HIST1H2BC PE = 1 SV = 4 2 0 13 30 Heat shock protein HSP 90-beta OS = Equus caballus GN = HSP90AB1 PE = 2 SV = 

0 0 7 31 Tubulin alpha-1A chain OS = Cricetulus griseus GN = TUBA1A PE = 2 SV = 1 4 9 7 32 Cathepsin D OS = Homo sapiens GN = CTSD PE = 1 SV = 1 0 0 8 33 Ubiquitin-60S ribosomal protein L40 OS = Bos taurus GN = UBA52 PE = 1 SV = 2 6 3 0 34 Laminin subunit gamma-2 OS = Homo sapiens GN = LAMC2 PE = 1 SV = 2 0 0 0 35 Heat shock cognate 71 kDa protein OS = Bos taurus GN = HSPA8 PE = 1 SV = 2 2 0 7 36 Tubulin beta-1 chain OS = Gadus morhua PE = 2 SV = 1 0 5 7 37 Fatty acid synthase OS = Homo sapiens GN = FASN PE = 1 SV = 3 0 0 0 38 Actin-18 OS = Dictyostelium discoideum GN = act18 PE = 3 SV = 3 0 0 0 39 Peptidyl-prolyl cis-trans isomerase A OS = Chlorocebus aethiops GN = PPIA PE = 

0 8 7 40 Amyloid beta A4 protein OS = Homo sapiens GN = APP PE = 1 SV = 3 0 0 0 41 Transitional endoplasmic reticulum ATPase OS = Homo sapiens GN = VCP PE = 1 0 0 15 42 14-3-3 protein sigma OS = Homo sapiens GN = SFN PE = 1 SV = 1 0 0 0 43 Integrin beta-1 OS = Homo sapiens GN = ITGB1 PE = 1 SV = 2 17 7 0 44 Collagen alpha-1(VI) chain OS = Homo sapiens GN = COL6A1 PE = 1 SV = 3 0 3 24 45 Heat shock protein beta-1 OS = Homo sapiens GN = HSPB1 PE = 1 SV = 2 0 0 0 46 Keratin, type I cytoskeletal 9 OS = Homo sapiens GN = KRT9 PE = 1 SV = 3 0 0 0 47 Elongation factor 2 OS = Callithrix jacchus GN = EEF2 PE = 2 SV = 1 0 0 4 48 Keratin, type II cytoskeletal 6A OS = Homo sapiens GN = KRT6A PE = 1 SV = 3 0 0 0 49 Heat shock 70 kDa protein 1A/1B OS = Homo sapiens GN = HSPA1A PE = 1 SV = 5 0 0 4 50 Nucleobindin-1 OS = Homo sapiens GN = NUCB1 PE = 1 SV = 4 0 0 0 51 14-3-3 protein zeta/delta OS = Bos taurus GN = YWHAZ PE = 1 SV = 1 0 4 6 52 Cystatin-S OS = Homo sapiens GN = CST4 PE = 1 SV = 3 3 9 5 53 Prelamin-A/C OS = Homo sapiens GN = LMNA PE = 1 SV = 1 0 0 23 54 Elongation factor 1-alpha 2 OS = Bos taurus GN = EEF1A2 PE = 2 SV = 1 0 4 3 55 Serotransferrin OS = Bos taurus GN = TF PE = 2 SV = 1 0 0 9 56 Gelsolin OS = Homo sapiens GN = GSN PE = 1 SV = 1 0 0 7 57 Mucin-5B OS = Homo sapiens GN = MUC5B PE = 1 SV = 3 16 0 0 58 Cullin-associated NEDD8-dissociated protein 1 OS = Bos taurus GN = CAND1 PE 

0 0 0 59 Fructose-bisphosphate aldolase A OS = Homo sapiens GN = ALDOA PE = 1 SV = 2 2 0 6 60 Peroxidasin homolog OS = Homo sapiens GN = PXDN PE = 1 SV = 2 3 0 19 61 Nucleophosmin OS = Homo sapiens GN = NPM1 PE = 1 SV = 2 0 0 0 62 Sulfhydryl oxidase 1 OS = Homo sapiens GN = QSOX1 PE = 1 SV = 3 0 3 24 63 Nucleolin OS = Homo sapiens GN = NCL PE = 1 SV = 3 0 0 0 64 Retinoic acid receptor responder protein 1 OS = Homo sapiens GN = RARRES1 

0 0 0 65 Alpha-actinin-4 OS = Homo sapiens GN = ACTN4 PE = 1 SV = 2 0 8 4 66 Keratin, type I cytoskeletal 14 OS = Homo sapiens GN = KRT14 PE = 1 SV = 4 0 0 0 67 Moesin OS = Homo sapiens GN = MSN PE = 1 SV = 3 5 13 4 68 Renin receptor OS = Homo sapiens GN = ATP6AP2 PE = 1 SV = 2 0 0 3 69 Fibronectin (Fragment) OS = Canis familiaris GN = FN1 PE = 2 SV = 2 0 0 8 70 Clathrin heavy chain 1 OS = Homo sapiens GN = CLTC PE = 1 SV = 5 0 5 0 71 Chloride intracellular channel protein 1 OS = Homo sapiens GN = CLIC1 PE = 1 S

0 3 11 72 Triosephosphate isomerase OS = Homo sapiens GN = TPI1 PE = 1 SV = 3 0 5 12 73 Apolipoprotein D OS = Homo sapiens GN = APOD PE = 1 SV = 1 0 0 0 74 60 kDa heat shock protein, mitochondrial OS = Homo sapiens GN = HSPD1 PE = 

0 0 0 75 Clusterin OS = Homo sapiens GN = CLU PE = 1 SV = 1 0 0 0 76 Tenascin OS = Homo sapiens GN = TNC PE = 1 SV = 3 0 9 18 77 Syndecan-4 OS = Homo sapiens GN = SDC4 PE = 1 SV = 2 0 0 0 78 14-3-3 protein epsilon OS = Bos taurus GN = YWHAE PE = 2 SV = 1 0 0 3 79 Ras GTPase-activating-like protein IQGAP1 OS = Homo sapiens GN = IQGAP1 P

0 9 0 80 L-lactate dehydrogenase B chain OS = Homo sapiens GN = LDHB PE = 1 SV = 2 0 4 8 81 Cofilin-1 OS = Homo sapiens GN = CFL1 PE = 1 SV = 3 0 2 2 82 Histone H4 type VIII OS = Gallus gallus GN = H4-VIII PE = 3 SV = 3 6 2 4 83 Agrin OS = Homo sapiens GN = AGRN PE = 1 SV = 4 0 0 3 84 Histone H1.2 (Fragment) OS = Bos taurus GN = HIST1H1C PE = 1 SV = 1 0 0 12 85 Phosphoglycerate mutase 1 OS = Homo sapiens GN = PGAM1 PE = 1 SV = 2 0 0 8 86 Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 OS = Homo sapiens GN = PL

0 0 15 87 Ubiquitin-like modifier-activating enzyme 1 OS = Homo sapiens GN = UBA1 PE = 

0 0 0 88 Alpha-1-macroglobulin OS = Rattus norvegicus GN = A1m PE = 1 SV = 1 0 0 0 89 Complement C3 OS = Homo sapiens GN = C3 PE = 1 SV = 2 0 0 5 90 Peroxiredoxin-1 OS = Homo sapiens GN = PRDX1 PE = 1 SV = 1 2 2 0 91 Ferritin heavy chain OS = Homo sapiens GN = FTH1 PE = 1 SV = 2 12 0 0 92 Profilin-1 OS = Homo sapiens GN = PFN1 PE = 1 SV = 2 0 7 0 93 Thioredoxin-1 OS = Escherichia coli O157:H7 GN = trxA PE = 1 SV = 2 0 0 0 94 5′-nucleotidase OS = Homo sapiens GN = NT5E PE = 1 SV = 1 10 6 0 95 Ferritin light chain OS = Homo sapiens GN = FTL PE = 1 SV = 2 10 0 0 96 Major vault protein OS = Homo sapiens GN = MVP PE = 1 SV = 4 11 4 0 97 Keratin, type II cytoskeletal 2 epidermal OS = Homo sapiens GN = KRT2 PE = 1 S

0 3 0 98 Integrin alpha-2 OS = Homo sapiens GN = ITGA2 PE = 1 SV = 1 4 6 0 99 Keratin, type II cytoskeletal 7 OS = Homo sapiens GN = KRT7 PE = 1 SV = 5 0 0 0 100 HLA class I histocompatibility antigen, A-2 alpha chain OS = Homo sapiens GN

7 3 0 101 Sodium/potassium-transporting ATPase subunit alpha-1 OS = Bos taurus GN = 

6 7 0 102 Complement C1r subcomponent OS = Pan troglodytes GN = C1R PE = 2 SV = 1 0 0 3 103 Serpin BS OS = Homo sapiens GN = SERPINB5 PE = 1 SV = 2 0 0 0 104 Lactadherin OS = Homo sapiens GN = MFGE8 PE = 1 SV = 2 5 3 0 105 UDP-glucose 6-dehydrogenase OS = Homo sapiens GN = UGDH PE = 1 SV = 1 0 0 0 106 Laminin subunit beta-3 OS = Homo sapiens GN = LAMB3 PE = 1 SV = 1 0 0 0 107 Basement membrane-specific heparan sulfate proteoglycan core protein OS

0 0 0 108 Keratin, type I cytoskeletal 17 OS = Homo sapiens GN = KRT17 PE = 1 SV = 2 0 0 0 109 Cadherin EGF LAG seven-pass G-type receptor 2 OS = Homo sapiens GN = CELS

0 0 0 110 GTP-binding nuclear protein Ran OS = Bos taurus GN = RAN PE = 2 SV = 3 0 0 4 111 Glucose-6-phosphate 1-dehydrogenase OS = Homo sapiens GN = G6PD PE = 1 S

0 0 0 112 Annexin A1 OS = Homo sapiens GN = ANXA1 PE = 1 SV = 2 4 5 5 113 Interstitial collagenase OS = Homo sapiens GN = MMP1 PE = 1 SV = 3 3 4 7 114 14-3-3 protein theta OS = Bos taurus GN = YWHAQ PE = 2 SV = 1 0 0 0 115 14-3-3 protein beta/alpha OS = Bos taurus GN = YWHAB PE = 1 SV = 2 0 0 2 116 Importin subunit beta-1 OS = Homo sapiens GN = KPNB1 PE = 1 SV = 2 0 0 0 117 Protein SET OS = Homo sapiens GN = SET PE = 1 SV = 3 0 0 0 118 14-3-3-like protein 1 OS = Caenorhabditis elegans GN = par-5 PE = 1 SV = 2 0 0 0 119 Lysosomal alpha-glucosidase OS = Homo sapiens GN = GAA PE = 1 SV = 4 0 0 0 120 Laminin subunit alpha-3 OS = Homo sapiens GN = LAMA3 PE = 1 SV = 2 0 0 0 121 Integrin alpha-3 OS = Homo sapiens GN = ITGA3 PE = 1 SV = 5 3 4 0 122 Extracellular sulfatase Sulf-2 OS = Homo sapiens GN = SULF2 PE = 1 SV = 1 0 0 0 123 Apolipoprotein A-I OS = Bos taurus GN = APOA1 PE = 1 SV = 3 0 0 0 124 60S acidic ribosomal protein P0 OS = Homo sapiens GN = RPLP0 PE = 1 SV = 1 0 0 0 125 Guanine nucleotide-binding protein subunit beta-2-like 1 OS = Bos taurus GN = 

0 0 0 126 78 kDa glucose-regulated protein OS = Homo sapiens GN = HSPA5 PE = 1 SV = 2 0 0 5 127 Glutathione S-transferase P OS = Homo sapiens GN = GSTP1 PE = 1 SV = 2 0 0 0 128 Myosin-9 OS = Homo sapiens GN = MYH9 PE = 1 SV = 4 0 0 2 129 Malate dehydrogenase, mitochondrial OS = Homo sapiens GN = MDH2 PE = 1 S

0 0 3 130 ATP synthase subunit beta, mitochondrial OS = Homo sapiens GN = ATP5B PE = 

0 0 0 131 Ras-related protein Rap-1b OS = Bos taurus GN = RAP1B PE = 2 SV = 1 0 0 0 132 Glycogen phosphorylase, brain form OS = Homo sapiens GN = PYGB PE = 1 SV = 5 0 0 6 133 Myosin light polypeptide 6 OS = Bos taurus GN = MYL6 PE = 2 SV = 2 0 4 0 134 Peroxiredoxin-5, mitochondrial OS = Homo sapiens GN = PRDX5 PE = 1 SV = 4 0 0 0 135 Carbonyl reductase [NADPH] 1 OS = Homo sapiens GN = CBR1 PE = 1 SV = 3 0 0 4 136 Fibronectin OS = Xenopus laevis GN = fn1 PE = 2 SV = 1 3 3 4 137 Latent-transforming growth factor beta-binding protein 1 OS = Homo sapiens 0 0 4 138 Core histone macro-H2A.1 OS = Homo sapiens GN = H2AFY PE = 1 SV = 4 0 0 6 139 Histone H3.1t OS = Homo sapiens GN = HIST3H3 PE = 1 SV = 3 0 0 2 140 Collagen alpha-1(XVIII) chain OS = Homo sapiens GN = COL18A1 PE = 1 SV = 5 0 0 0 141 Laminin subunit gamma-1 OS = Homo sapiens GN = LAMC1 PE = 1 SV = 3 0 0 0 142 Histone H2A.V OS = Bos taurus GN = H2AFV PE = 2 SV = 3 0 0 3 143 Fructose-1,6-bisphosphatase 1 OS = Homo sapiens GN = FBP1 PE = 1 SV = 5 0 0 0 144 High mobility group protein HMG-I/HMG-Y OS = Canis familiaris GN = HMGA1

0 0 6 145 Extracellular matrix protein 1 OS = Homo sapiens GN = ECM1 PE = 1 SV = 2 0 0 10 146 Alpha-1-acid glycoprotein OS = Bos taurus GN = ORM1 PE = 2 SV = 1 0 0 2 147 Elongation factor 1-alpha 1 OS = Bos taurus GN = EEF1A1 PE = 2 SV = 1 0 0 0 148 Olfactomedin-4 OS = Homo sapiens GN = OLFM4 PE = 1 SV = 1 0 0 0 149 Nucleobindin-2 OS = Homo sapiens GN = NUCB2 PE = 1 SV = 2 0 0 0 150 Tropomyosin alpha-3 chain OS = Rattus norvegicus GN = Tpm3 PE = 1 SV = 2 0 0 0 151 6-phosphogluconate dehydrogenase, decarboxylating OS = Homo sapiens GN

0 0 0 152 Heat shock protein HSP 90-alpha OS = Gallus gallus GN = HSP90AA1 PE = 3 SV = 3 0 0 0 153 Tubulin beta-5 chain OS = Bos taurus GN = TUBB5 PE = 2 SV = 1 2 4 4 154 Bifunctional purine biosynthesis protein PURH OS = Homo sapiens GN = ATIC P

0 0 0 155 Eukaryotic translation initiation factor SA-1 OS = Bos taurus GN = EIF5A PE = 2 S

0 0 0 156 Factor XIIa inhibitor OS = Bos taurus PE = 1 SV = 1 0 0 0 157 Fibrinogen alpha chain OS = Bos taurus GN = FGA PE = 1 SV = 5 0 0 0 158 Plectin OS = Homo sapiens GN = PLEC PE = 1 SV = 3 0 0 0 159 Alpha-S1-casein OS = Bos taurus GN = CSN1S1 PE = 1 SV = 2 0 0 0 160 Histone H2A type 1-B/E OS = Homo sapiens GN = HIST1H2AB PE = 1 SV = 2 0 0 3 161 Apolipoprotein A-I OS = Gorilla gorilla gorilla GN = APOA1 PE = 1 SV = 1 4 7 0 162 Intercellular adhesion molecule 1 OS = Homo sapiens GN = ICAM1 PE = 1 SV = 2 2 4 0 163 Programmed cell death 6-interacting protein OS = Homo sapiens GN = PDCD6

0 0 0 164 Eukaryotic initiation factor 4A-I OS = Bos taurus GN = EIF4A1 PE = 2 SV = 1 0 0 0 165 ADP-ribosylation factor 1 OS = Bos taurus GN = ARF1 PE = 1 SV = 2 0 0 0 166 Histone H2A type 1-A OS = Homo sapiens GN = HIST1H2AA PE = 1 SV = 3 0 0 5 167 Protein DJ-1 OS = Homo sapiens GN = PARK7 PE = 1 SV = 2 0 0 0 168 Amyloid-like protein 2 OS = Homo sapiens GN = APLP2 PE = 1 SV = 2 0 0 0 169 Pancreatic trypsin inhibitor OS = Bos taurus PE = 1 SV = 2 2 0 0 170 Glypican-1 OS = Homo sapiens GN = GPC1 PE = 1 SV = 2 0 0 0 171 Annexin A5 OS = Homo sapiens GN = ANXA5 PE = 1 SV = 2 0 2 2 172 F-actin-capping protein subunit beta OS = Bos taurus GN = CAPZB PE = 1 SV = 1 0 0 0 173 ProSAAS OS = Homo sapiens GN = PCSK1N PE = 1 SV = 1 0 0 0 174 Latent-transforming growth factor beta-binding protein 4 OS = Homo sapiens 0 0 0 175 Glutaredoxin-1 OS = Escherichia coli (strain K12) GN = grxA PE = 1 SV = 1 0 0 0 176 Stress-induced-phosphoprotein 1 OS = Homo sapiens GN = STIP1 PE = 1 SV = 1 0 0 0 177 Laminin subunit beta-1 OS = Homo sapiens GN = LAMB1 PE = 1 SV = 2 0 0 0 178 Protein NDRG1 OS = Homo sapiens GN = NDRG1 PE = 1 SV = 1 0 0 4 179 Pentraxin-related protein PTX3 OS = Homo sapiens GN = PTX3 PE = 1 SV = 3 3 4 0 180 Cystatin-C OS = Homo sapiens GN = CST3 PE = 1 SV = 1 0 2 0 181 Endoplasmin OS = Homo sapiens GN = HSP90B1 PE = 1 SV = 1 0 0 4 182 Cystatin-SN OS = Homo sapiens GN = CST1 PE = 1 SV = 3 0 0 6 183 Complement component 1 Q subcomponent-binding protein, mitochondrial 0 0 0 184 40S ribosomal protein SA OS = Bos taurus GN = RPSA PE = 2 SV = 4 0 0 3 185 Proactivator polypeptide OS = Homo sapiens GN = PSAP PE = 1 SV = 2 0 0 0 186 Elongation factor 1-delta OS = Homo sapiens GN = EEF1D PE = 1 SV = 5 0 0 0 187 Hemoglobin fetal subunit beta OS = Bos taurus PE = 1 SV = 1 0 0 0 188 Proteasome subunit alpha type-2 OS = Bos taurus GN = PSMA2 PE = 1 SV = 3 0 0 0 189 Cell division control protein 42 homolog OS = Bos taurus GN = CDC42 PE = 1 SV = 

0 0 0 190 Erythrocyte band 7 integral membrane protein OS = Homo sapiens GN = STOM

0 0 0 191 Ras-related protein Rab-1B OS = Bos taurus GN = RAB1B PE = 2 SV = 1 0 0 0 192 Periostin OS = Homo sapiens GN = POSTN PE = 1 SV = 2 0 0 0 193 Phosphoglycerate kinase 1 OS = Bos taurus GN = PGK1 PE = 2 SV = 3 0 0 4 194 Apolipoprotein E OS = Homo sapiens GN = APOE PE = 1 SV = 1 3 0 0 195 Synaptic vesicle membrane protein VAT-1 homolog OS = Homo sapiens GN = V

2 0 2 196 Talin-1 OS = Homo sapiens GN = TLN1 PE = 1 SV = 3 0 0 0 197 Heterogeneous nuclear ribonucleoprotein K OS = Bos taurus GN = HNRNPK PE = 

0 0 0 198 Galectin-3 OS = Homo sapiens GN = LGALS3 PE = 1 SV = 5 0 0 2 199 Transketolase OS = Homo sapiens GN = TKT PE = 1 SV = 3 0 0 0 200 Actin-related protein 3 OS = Bos taurus GN = ACTR3 PE = 1 SV = 3 0 0 0 201 60S ribosomal protein L12 OS = Bos taurus GN = RPL12 PE = 2 SV = 1 0 0 0 202 Puromycin-sensitive aminopeptidase OS = Homo sapiens GN = NPEPPS PE = 1 S

0 0 0 203 Actin-2 OS = Suillus bovinus GN = ACT2 PE = 2 SV = 1 0 0 0 204 Serine protease HTRA1 OS = Homo sapiens GN = HTRA1 PE = 1 SV = 1 0 0 0 205 Acidic leucine-rich nuclear phosphoprotein 32 family member A OS = Homo s

0 0 0 206 Galectin-1 OS = Homo sapiens GN = LGALS1 PE = 1 SV = 2 0 3 0 207 Beta-hexosaminidase subunit alpha OS = Homo sapiens GN = HEXA PE = 1 SV = 2 0 0 0 208 Peroxiredoxin-2 OS = Homo sapiens GN = PRDX2 PE = 1 SV = 5 0 0 0 209 Poly(rC)-binding protein 1 OS = Bos taurus GN = PCBP1 PE = 2 SV = 1 0 0 0 210 14-3-3 protein gamma OS = Bos taurus GN = YWHAG PE = 1 SV = 2 0 0 3 211 Beta-2-microglobulin OS = Gorilla gorilla gorilla GN = B2M PE = 3 SV = 1 2 2 0 212 Peptidyl-prolyl cis-trans isomerase FKBP4 OS = Homo sapiens GN = FKBP4 PE = 

0 0 0 213 Spectrin alpha chain, non-erythrocytic 1 OS = Homo sapiens GN = SPTAN1 PE = 

0 0 0 214 Lactotransferrin OS = Homo sapiens GN = LTF PE = 1 SV = 6 0 0 0 215 Gamma-enolase OS = Homo sapiens GN = ENO2 PE = 1 SV = 3 0 3 0 216 Keratin, type I cytoskeletal 18 OS = Mus musculus GN = Krt18 PE = 1 SV = 5 0 0 0 217 Histone H2B type 1-B OS = Homo sapiens GN = HIST1H2BB PE = 1 SV = 2 0 0 4 218 Extracellular superoxide dismutase [Cu—Zn] OS = Homo sapiens GN = SOD3 PE = 

0 0 4 219 Elongation factor 1-beta OS = Bos taurus GN = EEF1B PE = 2 SV = 3 0 0 0 220 Integrin alpha-6 OS = Homo sapiens GN = ITGA6 PE = 1 SV = 4 8 3 0 221 Gelsolin OS = Bos taurus GN = GSN PE = 2 SV = 1 0 0 0 222 Basigin (Fragment) OS = Bos taurus GN = BSG PE = 2 SV = 1 2 2 0 223 Cathepsin B OS = Homo sapiens GN = CTSB PE = 1 SV = 3 0 0 0 224 Elongation factor 1-gamma OS = Homo sapiens GN = EEF1G PE = 1 SV = 3 0 0 2 225 Tubulin beta-3 chain OS = Gallus gallus PE = 2 SV = 1 0 0 0 226 Adenine phosphoribosyltransferase OS = Homo sapiens GN = APRT PE = 1 SV = 2 0 0 0 227 Eukaryotic translation initiation factor 6 OS = Homo sapiens GN = EIF6 PE = 1 SV

0 0 0 228 Glypican-4 OS = Homo sapiens GN = GPC4 PE = 1 SV = 4 0 0 0 229 Protein disulfide-isomerase OS = Homo sapiens GN = P4HB PE = 1 SV = 3 0 0 0 230 Actin-related protein 2/3 complex subunit 4 OS = Bos taurus GN = ARPC4 PE = 1 0 0 0 231 Transaldolase OS = Homo sapiens GN = TALDO1 PE = 1 SV = 2 0 0 2 232 Metalloproteinase inhibitor 1 OS = Homo sapiens GN = TIMP1 PE = 1 SV = 1 0 0 3 233 Proteasome subunit beta type-1 OS = Homo sapiens GN = PSMB1 PE = 1 SV = 2 2 0 0 234 Single-stranded DNA-binding protein, mitochondrial OS = Homo sapiens GN = 

0 0 0 235 Proliferating cell nuclear antigen OS = Cricetulus griseus GN = PCNA PE = 1 SV = 1 0 0 0 236 Aminopeptidase B OS = Homo sapiens GN = RNPEP PE = 1 SV = 2 0 0 0 237 Tubulin alpha-1B chain OS = Bos taurus PE = 1 SV = 2 0 0 0 238 Complement C1s subcomponent OS = Homo sapiens GN = C1S PE = 1 SV = 1 0 0 0 239 Proteasome subunit beta type-6 OS = Homo sapiens GN = PSMB6 PE = 1 SV = 4 2 0 0 240 4F2 cell-surface antigen heavy chain OS = Homo sapiens GN = SLC3A2 PE = 1 SV

0 0 0 241 60S ribosomal protein L10a OS = Bos taurus GN = RPL10A PE = 2 SV = 3 0 0 0 242 ADP-sugar pyrophosphatase OS = Homo sapiens GN = NUDT5 PE = 1 SV = 1 0 0 0 243 Mucin-1 OS = Homo sapiens GN = MUC1 PE = 1 SV = 3 0 0 0 244 Syndecan-4 OS = Mus musculus GN = Sdc4 PE = 1 SV = 1 0 0 0 245 Glutathione S-transferase omega-1 OS = Homo sapiens GN = GSTO1 PE = 1 SV = 2 0 0 2 246 Stanniocalcin-1 OS = Homo sapiens GN = STC1 PE = 1 SV = 1 0 0 0 247 Collagen alpha-1(V) chain OS = Homo sapiens GN = COL5A1 PE = 1 SV = 3 0 0 8 248 Ezrin OS = Homo sapiens GN = EZR PE = 1 SV = 4 0 0 0 249 Proteasome subunit beta type-2 OS = Homo sapiens GN = PSMB2 PE = 1 SV = 1 0 0 0 250 Ribonuclease inhibitor OS = Homo sapiens GN = RNH1 PE = 1 SV = 2 0 0 0 251 Peroxiredoxin-6 OS = Homo sapiens GN = PRDX6 PE = 1 SV = 3 0 0 0 252 Antithrombin-III OS = Bos taurus GN = SERPINC1 PE = 1 SV = 2 0 0 0 253 Cadherin-1 OS = Homo sapiens GN = CDH1 PE = 1 SV = 3 0 0 0 254 Mucin-5AC (Fragments) OS = Homo sapiens GN = MUC5AC PE = 1 SV = 3 2 0 0 255 WD repeat-containing protein 1 OS = Bos taurus GN = WDR1 PE = 2 SV = 3 0 0 0 256 Proteasome subunit beta type-5 OS = Bos taurus GN = PSMB5 PE = 1 SV = 1 0 0 0 257 Fascin OS = Homo sapiens GN = FSCN1 PE = 1 SV = 3 0 0 0 258 Fibronectin OS = Rattus norvegicus GN = Fn1 PE = 1 SV = 2 0 0 2 259 Transcription intermediary factor 1-beta OS = Homo sapiens GN = TRIM28 PE = 

0 0 0 260 Beta-galactosidase OS = Homo sapiens GN = GLB1 PE = 1 SV = 2 0 0 0 261 Calmodulin-alpha (Fragment) OS = Arbacia punctulata PE = 2 SV = 2 0 4 0 262 Aminopeptidase N OS = Homo sapiens GN = ANPEP PE = 1 SV = 4 0 0 0 263 Fibroblast growth factor-binding protein 1 OS = Homo sapiens GN = FGFBP1 PE

0 0 0 264 Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha 0 0 0 265 Beta-lactoglobulin OS = Bos taurus GN = LGB PE = 1 SV = 3 0 0 0 266 Proteolipid protein 2 OS-Homo sapiens GN = PLP2 PE = 1 SV = 1 0 2 0 267 Transgelin-2 OS-Homo sapiens GN = TAGLN2 PE = 1 SV = 3 2 0 0 268 Complement C4-A OS = Homo sapiens GN = C4A PE = 1 SV = 1 0 0 8 269 Fructose-bisphosphate aldolase C OS = Homo sapiens GN = ALDOC PE = 1 SV = 2 0 0 0 270 Integrin beta-4 OS = Homo sapiens GN = ITGB4 PE = 1 SV = 5 4 2 0 271 Prostaglandin F2 receptor negative regulator OS = Homo sapiens GN = PTGFRN

0 0 0 272 Inter-alpha-trypsin inhibitor heavy chain H2 OS = Mus musculus GN = Itih2 PE = 

0 0 0 273 Chloride intracellular channel protein 4 OS = Homo sapiens GN = CLIC4 PE = 1 S

0 0 0 274 Omega-amidase NIT2 OS = Homo sapiens GN = NIT2 PE = 1 SV = 1 0 0 0 275 Alpha-fetoprotein OS = Bos taurus GN = AFP PE = 2 SV = 1 0 0 0 276 Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 OS = H

6 0 0 277 Acidic leucine-rich nuclear phosphoprotein 32 family member B OS = Homo s

0 0 0 278 Pyridoxal kinase OS = Homo sapiens GN = PDXK PE = 1 SV = 1 0 0 0 279 Tumor-associated calcium signal transducer 2 OS = Homo sapiens GN = TACST

0 0 0 280 Secernin-1 OS = Homo sapiens GN = SCRN1 PE = 1 SV = 2 0 0 0 281 Nicotinamide N-methyltransferase OS = Homo sapiens GN = NNMT PE = 1 SV = 1 0 0 0 282 T-complex protein 1 subunit beta OS = Homo sapiens GN = CCT2 PE = 1 SV = 4 0 0 0 283 Inter-alpha-trypsin inhibitor heavy chain H4 OS = Bos taurus GN = ITIH4 PE = 2 S

0 0 0 284 Ras-related protein Rab-7a OS = Canis familiaris GN = RAB7A PE = 2 SV = 1 0 0 0 285 Neutral amino acid transporter B(0) OS = Homo sapiens GN = SLC1A5 PE = 1 SV = 

0 0 0 286 Calsyntenin-1 OS = Homo sapiens GN = CLSTN1 PE = 1 SV = 1 0 0 4 287 Spliceosome RNA helicase DDX398 OS = Bos taurus GN = DDX398 PE = 2 SV = 1 0 0 0 288 Ras-related C3 botulinum toxin substrate 1 OS = Bos taurus GN = RAC1 PE = 1 S

0 0 0 289 Tripeptidyl-peptidase 1 OS = Homo sapiens GN = TPP1 PE = 1 SV = 2 0 0 0 290 Catenin alpha-1 OS = Bos taurus GN = CTNNA1 PE = 2 SV = 1 0 0 0 291 Actin-related protein 2-A OS = Danio rerio GN = actr2a PE = 2 SV = 1 0 0 0 292 CD109 antigen OS = Homo sapiens GN = CD109 PE = 1 SV = 2 0 0 0 293 6-phosphogluconolactonase OS = Homo sapiens GN = PGLS PE = 1 SV = 2 0 0 4 294 Carboxypeptidase E OS = Homo sapiens GN = CPE PE = 1 SV = 1 0 0 0 295 Far upstream element-binding protein 1 OS = Homo sapiens GN = FUBP1 PE = 1 0 0 0 296 Adenosylhomocysteinase OS = Homo sapiens GN = AHCY PE = 1 SV = 4 0 0 0 297 Cytosol aminopeptidase OS = Homo sapiens GN = LAP3 PE = 1 SV = 3 0 0 0 298 40S ribosomal protein S3 OS = Bos taurus GN = RPS3 PE = 2 SV = 1 0 0 0 299 Proteasome subunit alpha type-1 OS = Homo sapiens GN = PSMA1 PE = 1 SV = 1 0 0 0 300 Macrophage-capping protein OS = Homo sapiens GN = CAPG PE = 1 SV = 2 2 0 0 301 Keratin, type II cytoskeletal 8 OS = Mus musculus GN = Krt8 PE = 1 SV = 4 0 0 0 302 Keratin, type II cytoskeletal 1 OS = Rattus norvegicus GN = Krt1 PE = 2 SV = 1 0 0 0 303 Hexokinase-1 OS = Homo sapiens GN = HK1 PE = 1 SV = 3 0 0 0 304 Semaphorin-3C OS = Homo sapiens GN = SEMA3C PE = 1 SV = 2 0 0 0 305 Clusterin OS = Bos taurus GN = CLU PE = 1 SV = 1 0 0 0 306 Integrin beta-1 OS = Bos taurus GN = ITGB1 PE = 1 SV = 3 3 0 0 307 Keratin, type I cytoskeletal 16 OS = Homo sapiens GN = KRT16 PE = 1 SV = 4 0 0 0 308 Fetuin-B OS = Bos taurus GN = FETUB PE = 2 SV = 1 0 0 0 309 Alanine-tRNA ligase, cytoplasmic OS = Homo sapiens GN = AARS PE = 1 SV = 2 0 0 0 310 Ras-related protein Rab-11A OS = Bos taurus GN = RAB11A PE = 2 SV = 3 0 0 0 311 Rab GDP dissociation inhibitor alpha OS = Homo sapiens GN = GDI1 PE = 1 SV = 2 0 0 0 312 T-complex protein 1 subunit gamma OS = Bos taurus GN = CCT3 PE = 1 SV = 1 0 0 0 313 Lysosomal protective protein OS = Homo sapiens GN = CTSA PE = 1 SV = 2 0 0 0 314 Ubiquitin carboxyl-terminal hydrolase 5 OS = Homo sapiens GN = USP5 PE = 1 S

0 0 0 315 Alpha-actinin-1 OS = Bos taurus GN = ACTN1 PE = 2 SV = 1 0 0 0 316 Trypsin-2 OS = Homo sapiens GN = PRSS2 PE = 1 SV = 1 0 0 3 317 Ubiquitin thioesterase OTUB1 OS = Homo sapiens GN = OTUB1 PE = 1 SV = 2 0 0 0 318 Nucleoside diphosphate kinase A 1 OS = Bos taurus GN = NME1-1 PE = 1 SV = 3 0 0 0 319 F-actin-capping protein subunit alpha-2 OS = Loxodonta africana GN = CAPZA2 0 0 0 320 Laminin subunit alpha-5 OS = Homo sapiens GN = LAMA5 PE = 1 SV = 8 0 0 0 321 Platelet-activating factor acetylhydrolase IB subunit beta OS = Bos taurus GN = 

0 0 0 322 Secreted frizzled-related protein 1 OS = Bos taurus GN = SFRP1 PE = 2 SV = 1 0 0 0 323 Vacuolar protein sorting-associated protein 35 OS = Bos taurus GN = VPS35 PE

0 0 0 324 Proteasome subunit beta type-3 OS = Bos taurus GN = PSMB3 PE = 1 SV = 3 0 0 0 325 Keratin, type I cytoskeletal 15 OS = Homo sapiens GN = KRT15 PE = 1 SV = 3 0 0 0 326 Fatty acid-binding protein, epidermal OS = Homo sapiens GN = FABP5 PE = 1 SV = 

0 0 0 327 Importin-7 OS = Homo sapiens GN = IPO7 PE = 1 SV = 1 0 0 0 328 Neutrophil gelatinase-associated lipocalin OS = Homo sapiens GN = LCN2 PE = 1 0 0 0 329 40S ribosomal protein S4, X isoform OS = Chlorocebus aethiops GN = RPS4X PE 0 0 0 330 Signal transducer and activator of transcription 1-alpha/beta OS = Homo sap

0 0 0 331 Glycine-tRNA ligase OS = Homo sapiens GN = GARS PE = 1 SV = 3 0 0 0 332 Heterogeneous nuclear ribonucleoprotein O OS = Homo sapiens GN = SYNCRIP 0 0 0 333 Rho GDP-dissociation inhibitor 1 OS = Homo sapiens GN = ARHGDIA PE = 1 SV = 3 0 0 2 334 Serum albumin OS = Ovis aries GN = ALB PE = 2 SV = 1 0 0 0 335 Serum albumin OS = Oryctolagus cuniculus GN = ALB PE = 1 SV = 2 0 0 0 336 Chloride intracellular channel protein 6 OS = Rattus norvegicus GN = Ctic6 PE = 1 0 0 2 337 F-actin-capping protein subunit alpha-1 OS = Bos taurus GN = CAPZA1 PE = 2 SV

0 0 0 338 Lysosomal acid lipase/cholesteryl ester hydrolase OS = Homo sapiens GN = LIP

0 0 0 339 Heat shock 70 kDa protein 4 OS = Canis familiaris GN = HSPA4 PE = 1 SV = 1 0 0 0 340 Importin-5 OS = Homo sapiens GN = IPO5 PE = 1 SV = 4 0 0 0 341 14-3-3 protein eta OS = Homo sapiens GN = YWHAH PE = 1 SV = 4 0 0 0 342 Cellular retinoic acid-binding protein 2 OS = Homo sapiens GN = CRABP2 PE = 1

0 0 0 343 V-type proton ATPase subunit S1 OS = Homo sapiens GN = ATP6AP1 PE = 1 SV = 2

0 0 0 344 Protein S100-A10 OS = Bos taurus GN = S100A10 PE = 1 SV = 2 0 2 0 345 Triptophan-tRNA ligase, cytoplasmic OS = Homo sapiens GN = WARS PE = 1 SV

0 0 0 346 Prominin-2 OS = Homo sapiens GN = PROM2 PE = 1 SV = 1 0 0 0 347 Deoxyribonucleoside 5′-monophosphate N-glycosidase OS = Homo sapiens G

0 0 0 348 T-complex protein 1 subunit epsilon OS = Homo sapiens GN = CCT5 PE = 1 SV = 1 0 0 0 349 HLA class I histocompatibility antigen, B-35 alpha chain OS = Homo sapiens G

2 0 0 350 C-1-tetrahydrofolate synthase, cytoplasmic OS = Homo sapiens GN = MTHFD1 0 0 0 351 Beta-hexosaminidase subunit beta OS = Homo sapiens GN = HEXB PE = 1 SV = 3 0 0 0 352 Keratin, type I cuticular Ha1 OS = Homo sapiens GN = KRT31 PE = 2 SV = 3 0 0 3 353 Prominin-1 OS = Homo sapiens GN = PROM1 PE = 1 SV = 1 0 0 0 354 Carcinoembryonic antigen-related cell adhesion molecule 1 OS = Homo sapie

0 0 0 355 Heterogeneous nuclear ribonucleoprotein A1 OS = Bos taurus GN = HNRNPA1 

0 0 0 356 Nicotinamide phosphoribosyltransferase OS = Homo sapiens GN = NAMPT PE = 

0 0 0 357 Guanine nucleotide-binding protein G(i) subunit alpha-2 OS = Canis familiaris 

0 0 0 358 Glia maturation factor beta OS = Bos taurus GN = GMFB PE = 1 SV = 2 0 0 0 359 26S proteasome non-ATPase regulatory subunit 2 OS = Bos taurus GN = PSMD

0 0 0 360 Isochorismatase domain-containing protein 1 OS = Bos taurus GN = ISOC1 PE = 

0 0 0 361 Exportin-2 OS = Bos taurus GN = CSE1L PE = 2 SV = 1 0 0 0 362 Creatine kinase U-type, mitochondrial OS = Homo sapiens GN = CKMT1A PE = 1 0 0 0 363 Farnesyl pyrophosphate synthase OS = Homo sapiens GN = FDPS PE = 1 SV = 4 0 0 0 364 Proteasome activator complex subunit 1 OS = Homo sapiens GN = PSME1 PE = 

0 0 0 365 Phosphatidylethanolamine-binding protein 1 OS = Homo sapiens GN = PEBP1 

0 0 0 366 Adenylyl cyclase-associated protein 1 OS = Macaca fascicularis GN = CAP1 PE = 

0 0 0 367 Syntenin-1 OS = Homo sapiens GN = SDCBP PE = 1 SV = 1 0 0 0 368 Aldo-keto reductase family 1 member C1 OS = Homo sapiens GN = AKR1C1 PE = 

0 0 0 369 Biliverdin reductase A OS = Homo sapiens GN = BLVRA PE = 1 SV = 2 0 0 0 370 PCTP-like protein OS = Homo sapiens GN = STARD10 PE = 2 SV = 2 0 0 0 371 Kinesin-1 heavy chain OS = Homo sapiens GN = KIP5B PE = 1 SV = 1 0 0 0 372 Selenium-binding protein 1 OS = Homo sapiens GN = SELENBP1 PE = 1 SV = 2 0 0 0 373 T-complex protein 1 subunit eta OS = Bos taurus GN = CCT7 PE = 1 SV = 1 0 0 0 374 Disintegrin and metalloproteinase domain-containing protein 15 OS = Homo s

0 0 0 375 Plasma alpha-L-fucosidase OS = Homo sapiens GN = FUCA2 PE = 1 SV = 2 0 0 0 376 Superoxide dismutase [Mn], mitochondrial OS = Homo sapiens GN = SOD2 PE = 

0 0 0 377 Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS = Homo sapiens 0 0 0 378 T-complex protein 1 subunit zeta OS = Homo sapiens GN = CCT6A PE = 1 SV = 3 0 0 0 379 40S ribosomal protein S18 OS = Bos taurus GN = RPS18 PE = 2 SV = 3 0 0 0 380 Carcinoembryonic antigen-related cell adhesion molecule 6 OS = Homo sapie

0 0 0 381 Proteasome subunit beta type-4 OS = Homo sapiens GN = PSMB4 PE = 1 SV = 4 0 0 0 382 Splicing factor, proline- and glutamine-rich OS = Homo sapiens GN = SFPQ PE = 

0 0 0 383 Acyl-coenzyme A thioesterase 13 OS = Homo sapiens GN = ACOT13 PE = 1 SV = 1 0 0 3 384 Heat shock 70 kDa protein cognate 2 OS = Drosophila melanogaster GN = Hsc7 0 0 0 385 Transthyretin OS = Bos taurus GN = TTR PE = 1 SV = 1 0 0 0 386 Sepiapterin reductase OS = Homo sapiens GN = SPR PE = 1 SV = 1 0 0 0 387 Nascent polypeptide-associated complex subunit alpha, muscle-specific form

0 0 0 388 Charged multivesicular body protein 4b OS = Homo sapiens GN = CHMP4B PE = 

0 0 0 389 Heat shock cognate 70 kDa protein OS = Oncorhynchus mykiss GN = hsc71 PE = 

0 0 0 390 T-complex protein 1 subunit delta OS = Bos taurus GN = CCT4 PE = 1 SV = 3 0 0 0 391 45 kDa calcium-binding protein OS = Homo sapiens GN = SDF4 PE = 1 SV = 1 0 0 0 392 Integrin alpha-V OS = Homo sapiens GN = ITGAV PE = 1 SV = 2 3 0 0 393 Protein disulfide-isomerase A4 OS = Homo sapiens GN = PDIA4 PE = 1 SV = 2 0 0 2 394 Thymidine phosphorylase OS = Homo sapiens GN = TYMP PE = 1 SV = 2 0 0 0 395 Lactoylglutathione lyase OS = Homo sapiens GN = GLO1 PE = 1 SV = 4 0 0 0 396 Glutathione S-transferase Mu 3 OS = Homo sapiens GN = GSTM3 PE = 1 SV = 3 0 0 0 397 40S ribosomal protein S20 OS = Bos taurus GN = RPS20 PE = 3 SV = 1 0 0 0 398 Heterogeneous nuclear ribonucleoproteins C1/C2 OS = Homo sapiens GN = HN

0 0 0 399 Dynactin subunit 2 OS = Homo sapiens GN = DCTN2 PE = 1 SV = 4 0 0 0 400 Sialidase-1 OS = Homo sapiens GN = NEU1 PE = 1 SV = 1 0 0 0 401 Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS = Bos ta

0 0 0 402 T-complex protein 1 subunit theta OS = Gallus gallus GN = CCT8 PE = 1 SV = 3 0 0 0 403 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS = Homo sapiens GN = PL

0 0 0 404 Keratin, type II cuticular Hb6 OS = Homo sapiens GN = KRT86 PE = 1 SV = 1 0 0 4 405 NAD(P)H dehydrogenase [quinone] 1 OS = Homo sapiens GN = NQO1 PE = 1 SV = 

0 0 0 406 Chromobox protein homolog 3 OS = Homo sapiens GN = CBX3 PE = 1 SV = 4 0 0 0 407 Macrophage colony-stimulating factor 1 OS = Homo sapiens GN = CSF1 PE = 1 S

0 0 0 408 High mobility group protein B1 OS = Bos taurus GN = HMGB1 PE = 1 SV = 3 0 0 0 409 DNA-(apurinic or apyrimidinic site) lyase OS = Gorilla gorilla gorilla GN = APEX1 0 0 0 410 Stress-70 protein, mitochondrial OS = Bos taurus GN = HSPA9 PE = 2 SV = 1 0 0 0 411 Protein disulfide-isomerase A6 OS = Homo sapiens GN = PDIA6 PE = 1 SV = 1 0 0 0 412 Destrin OS = Bos taurus GN = DSTN PE = 2 SV = 3 0 0 0 413 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS = Bos ta

0 0 0 414 Alkaline phosphatase, placental type OS = Homo sapiens GN = ALPP PE = 1 SV = 2 0 0 0 415 Tubulointerstitial nephritis antigen-like OS = Homo sapiens GN = TINAGL1 PE = 

0 0 0 416 T-complex protein 1 subunit alpha OS = Cricetulus griseus GN = TCP1 PE = 2 SV = 

0 0 0 417 DNA damage-binding protein 1 OS = Bos taurus GN = DDB1 PE = 2 SV = 1 0 0 0 418 Decorin OS = Homo sapiens GN = DCN PE = 1 SV = 1 0 0 0 419 Heat shock protein 105 kDa OS = Homo sapiens GN = HSPH1 PE = 1 SV = 1 0 0 0 420 Flavin reductase (NADPH) OS = Homo sapiens GN = BLVRB PE = 1 SV = 3 0 0 0 421 Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS = Homo sapiens GN = UC

0 0 0 422 40S ribosomal protein S3a OS = Bos taurus GN = RPS3A PE = 2 SV = 3 0 0 0 423 Specifically androgen-regulated gene protein OS = Homo sapiens GN = SARG P

0 0 0 424 Transforming protein RhoA OS = Bos taurus GN = RHOA PE = 1 SV = 1 0 0 0 425 Neutral alpha-glucosidase AB OS = Homo sapiens GN = GANAB PE = 1 SV = 3 0 0 0 426 Coatomer subunit gamma-1 OS = Bos taurus GN = COPG1 PE = 1 SV = 1 0 0 0 427 60S acidic ribosomal protein P1 OS = Bos taurus GN = RPLP1 PE = 3 SV = 1 0 0 0 428 Midkine OS = Homo sapiens GN = MDK PE = 1 SV = 1 0 0 0 429 Eukaryotic translation initiation factor 2 subunit 1 OS = Homo sapiens GN = EIF 0 0 0 430 Tropomyosin alpha-4 chain OS = Equus caballus GN = TPM4 PE = 1 SV = 2 0 0 0 431 Proteasome activator complex subunit 3 OS = Gallus gallus GN = PSME3 PE = 1 S

0 0 0 432 Hypoxanthine-guanine phosphoribosyltransferase OS = Homo sapiens GN = HP

0 0 0 433 Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 OS = Homo sapiens GN = PL

0 0 0 434 Hsp90 co-chaperone Cdc37 OS = Homo sapiens GN = CDC37 PE = 1 SV = 1 0 0 0 435 Calcyclin-binding protein OS-Homo sapiens GN = CACYBP PE = 1 SV = 2 0 0 0 436 Abhydrolase domain-containing protein 14B OS = Homo sapiens GN = ABHD14

0 0 0 437 Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cycli

0 0 0 438 Fumarate hydratase, mitochondrial OS = Homo sapiens GN = FH PE = 1 SV = 3 0 0 0 439 Protein SEC13 homolog OS = Homo sapiens GN = SEC13 PE = 1 SV = 3 0 0 0 440 Enoyl-CoA hydratase, mitochondrial OS = Pongo abelii GN = ECHS1 PE = 2 SV = 1 0 0 0 441 Electron transfer flavoprotein subunit alpha, mitochondrial OS = Homo sapie

0 0 0 442 Poly(rC)-binding protein 2 OS = Homo sapiens GN = PCBP2 PE = 1 SV = 1 0 0 0 443 Translationally-controlled tumor protein OS = Homo sapiens GN = TPT1 PE = 1 S

0 0 0 444 Ras-related protein Rap-2a OS = Sus scrofa GN = RAP2A PE = 2 SV = 1 0 0 0 445 Brain acid soluble protein 1 OS = Homo sapiens GN = BASP1 PE = 1 SV = 2 0 0 0 446 Complement C3 OS = Bos taurus GN = C3 PE = 1 SV = 2 0 0 0 447 Glucosylceramidase OS = Homo sapiens GN = GBA PE = 1 SV = 3 0 0 0 448 Inorganic pyrophosphatase OS = Homo sapiens GN = PPA1 PE = 1 SV = 2 0 0 0 449 Regucalcin OS = Bos taurus GN = RGN PE = 2 SV = 1 0 0 0 450 S-formylglutathione hydrolase OS = Homo sapiens GN = ESD PE = 1 SV = 2 0 0 0 451 Hsc70-interacting protein OS = Homo sapiens GN = ST13 PE = 1 SV = 2 0 0 0 452 X-ray repair cross-complementing protein 5 OS = Homo sapiens GN = XRCC5 P

0 0 0 453 Importin-4 OS = Homo sapiens GN = IPO4 PE = 1 SV = 2 0 0 0 454 Alpha-1-antichymotrypsin OS = Homo sapiens GN = SERPINA3 PE = 1 SV = 2 0 0 0 455 Glucosamine-fructose-6-phosphate aminotransferase [isomerizing] 1 OS = H

0 0 0 456 Microtubule-associated protein RP/EB family member 1 OS = Homo sapiens 

0 0 0 457 V-type proton ATPase catalytic subunit A OS = Homo sapiens GN = ATP6V1A P

0 0 0 458 Palmitoyl-protein thioesterase 1 OS = Mus musculus GN = Ppt1 PE = 2 SV = 2 0 0 0 459 UPF0364 protein C6orf211 OS = Homo sapiens GN = C6orf211 PE = 1 SV = 1 0 0 0 460 Fibulin-1 (Fragment) OS = Chlorocebus aethiops GN = FBLN1 PE = 1 SV = 1 0 0 0 461 Nucleosome assembly protein 1-like 1 OS = Bos taurus GN = NAP1L1 PE = 2 SV = 

0 0 0 462 Receptor-type tyrosine-protein phosphatase F OS = Homo sapiens GN = PTPRF 0 0 0 463 isoleucine--tRNA ligase, mitochondrial OS = Homo sapiens GN = IARS2 PE = 1 SV

0 0 0 464 Arginine--tRNA ligase, cytoplasmic OS = Homo sapiens GN = RARS PE = 1 SV = 2 0 0 0 465 Serine--tRNA ligase, cytoplasmic OS = Homo sapiens GN = SARS PE = 1 SV = 3 0 0 0 466 Alpha-galactosidase A OS = Homo sapiens GN = GLA PE = 1 SV = 1 0 0 0 467 Methionine--tRNA ligase, cytoplasmic OS = Homo sapiens GN = MARS PE = 1 SV

0 0 0 468 26S proteasome non-ATPase regulatory subunit 8 OS = Homo sapiens GN = PS

0 0 0 469 Aflatoxin B1 aldehyde reductase member 2 OS = Homo sapiens GN = AKR7A2 

0 0 0 470 Cytoplasmic dynein 1 intermediate chain 2 OS = Bos taurus GN = DYNC1l2 PE = 

0 0 0 471 Epidermal growth factor receptor kinase substrate 8-like protein 1 OS = Homo

0 0 0 472 Growth/differentiation factor 15 OS = Homo sapiens GN = GDF15 PE = 1 SV = 3 0 0 0 473 Hydroxyacylglutathione hydrolase, mitochondrial OS = Homo sapiens GN = HA

0 0 0 474 Glycerol-3-phosphate dehydrogenase 1-like protein OS = Homo sapiens GN = G

0 0 0 475 Beta-hexosaminidase subunit alpha OS = Pongo abelii GN = HEXA PE = 3 SV = 1 0 0 0 476 Insulin-like growth factor-binding protein 1 OS = Homo sapiens GN = IGFBP1 P

0 0 0 477 Inositol monophosphatase 1 OS = Homo sapiens GN = IMPA1 PE = 1 SV = 1 0 0 0 478 Pyruvate kinase isozymes M1/M2 OS = Mus musculus GN = Pkm PE = 1 SV = 4 0 0 0 479 Programmed cell death protein 6 OS = Homo sapiens GN = PDCD6 PE = 1 SV = 1 0 0 0 480 Alpha-soluble NSF attachment protein OS = Homo sapiens GN = NAPA PE = 1 SV

0 0 0 481 Serpin A3-1 OS = Bos taurus GN = SERPINA3-1 PE = 1 SV = 3 0 0 0 482 Eukaryotic translation initiation factor 3 subunit C OS = Bos taurus GN = EIF3C 

0 0 0 483 Vesicle-associated membrane protein-associated protein A OS = Bos taurus G 0 0 0 484 Calpain-1 catalytic subunit OS = Homo sapiens GN = CAPN1 PE = 1 SV = 1 0 0 0 485 Histone H1.5 OS = Homo sapiens GN = HIST1H1B PE = 1 SV = 3 0 0 0 486 Dihydropyrimidinase-related protein 2 OS = Homo sapiens GN = DPYSL2 PE = 1 

0 0 0 487 Coronin-1B OS = Homo sapiens GN = CORO1B PE = 1 SV = 1 0 0 0 488 X-ray repair cross-complementing protein 6 OS = Homo sapiens GN = XRCC6 P

0 0 0 489 6-phosphofructokinase, liver type OS = Homo sapiens GN = PFKL PE = 1 SV = 6 0 0 0 490 Tubulin beta-3 chain OS = Bos taurus GN = TUBB3 PE = 2 SV = 1 0 0 0 491 Anterior gradient protein 2 homolog OS = Homo sapiens GN = AGR2 PE = 1 SV = 1

0 0 0 492 Antithrombin-III OS = Mus musculus GN = Serpinc1 PE = 1 SV = 1 0 0 0 493 Apoptosis inhibitor 5 OS = Homo sapiens GN = API5 PE = 1 SV = 3 0 0 0 494 ATP synthase subunit delta, mitochondrial OS = Homo sapiens GN = ATP5D PE = 

0 0 0 495 Brain-specific angiogenesis inhibitor 1-associated protein 2 OS = Homo sapien

0 0 0 496 Basal cell adhesion molecule OS = Homo sapiens GN = BCAM PE = 1 SV = 2 0 0 0 497 Alpha-S2-casein OS = Bos taurus GN = CSN1S2 PE = 1 SV = 2 0 0 0 498 Chromobox protein homolog 1 OS = Homo sapiens GN = CBX1 PE = 1 SV = 1 0 0 0 499 Protocadherin Fat 2 OS = Homo sapiens GN = FAT2 PE = 1 SV = 2 0 0 0 500 Flotillin-1 OS = Homo sapiens GN = FLOT1 PE = 1 SV = 3 2 0 0 501 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 OS = Bos ta

0 0 0 502 Heat shock 70 kDa protein 1A OS = Bos taurus GN = HSPA1A PE = 2 SV = 2 0 0 0 503 Keratin, type II cytoskeletal 4 OS = Homo sapiens GN = KRT4 PE = 1 SV = 4 0 0 0 504 Large neutral amino acids transporter small subunit 1 OS = Homo sapiens GN = 

0 0 0 505 Latexin OS = Homo sapiens GN = LXN PE = 1 SV = 2 0 0 0 506 Nucleosome assembly protein 1-like 4 OS = Homo sapiens GN = NAP1L4 PE = 1 S

0 0 0 507 Protocadherin beta-14 OS = Homo sapiens GN = PCDHB14 PE = 2 SV = 1 0 0 0 508 Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS 0 0 0 509 Ran-specific GTPase-activating protein OS = Homo sapiens GN = RANBP1 PE = 1 0 0 0 510 Histone-binding protein RBBP7 OS = Bos taurus GN = RBBP7 PE = 2 SV = 1 0 0 0 511 40S ribosomal protein S16 OS = Bos taurus GN = RPS16 PE = 2 SV = 3 0 0 0 512 Antileukoproteinase OS = Homo sapiens GN = SLPI PE = 1 SV = 2 0 0 0 513 3-ketoacyl-CoA thiolase, mitochondrial OS = Homo sapiens GN = ACAA2 PE = 1 S

0 0 0 514 3-mercaptopyruvate sulfurtransferase OS = Homo sapiens GN = MPST PE = 1 SV

0 0 0 515 Glucose-6-phosphate isomerase OS = Homo sapiens GN = GPI PE = 1 SV = 4 0 0 0 516 Ovalbumin OS = Gallus gallus GN = SERPINB14 PE = 1 SV = 2 0 0 0 517 26S proteasome non-ATPase regulatory subunit 5 OS = Homo sapiens GN = PS

0 0 0 518 Ras-related protein Rab-22A OS = Homo sapiens GN = RAB22A PE = 1 SV = 2 0 0 0 519 40S ribosomal protein S15a OS = Bos taurus GN = RPS15A PE = 2 SV = 1 0 0 0 520 40S ribosomal protein S17-like OS = Homo sapiens GN = RPS17L PE = 3 SV = 1 0 0 0 521 40S ribosomal protein S25 OS = Bos taurus GN = RPS25 PE = 2 SV = 1 0 0 0 522 40S ribosomal protein S7 OS = Bos taurus GN = RPS7 PE = 2 SV = 1 0 0 0 523 SUMO-activating enzyme subunit 1 OS = Homo sapiens GN = SAE1 PE = 1 SV = 1 0 0 0 524 Septin-2 OS = Homo sapiens GN = SEPT2 PE = 1 SV = 1 0 0 0 525 Stanniocalcin-2 OS = Homo sapiens GN = STC2 PE = 1 SV = 1 0 0 0 526 Isoleucine--tRNA ligase, cytoplasmic OS = Homo sapiens GN = IARS PE = 1 SV = 2 0 0 0 527 Tubulin beta-4 chain OS = Caenorhabditis elegans GN = tbb-4 PE = 2 SV = 1 0 0 0 528 Tumor necrosis factor receptor superfamily member 11B OS = Homo sapiens 0 0 0 529 Melanotransferrin OS = Homo sapiens GN = MFI2 PE = 1 SV = 2 0 0 0 530 NEDD8-conjugating enzyme Ubc12 OS = Bos taurus GN = UBE2M PE = 2 SV = 1 0 0 0

indicates data missing or illegible when filed

TABLE 2 Comparative Gene Ontology for the Proteomic Data Cellular Gene p-values component GO Ontology ID HA UCF Exo extracellular GO: 0070062 8.17E−21 2.20E−03 1.73E−03 vesicular exosome extracellular GO: 0065010 3.26E−20 1.87E−03 1.18E−03 membrane-bounded organelle extracellular GO: 0043230 3.26E−20 7.36E−04 1.96E−05 organelle membrane-bounded GO: 0031988 2.90E−15 1.62E−04 1.75E−08 vesicle vesicle GO: 0031982 2.74E−15 9.26E−05 4.24E−10 cytoplasmic GO: 0016023 1.38E−05 4.09E−08 1.30E−12 membrane-bounded vesicle cytoplasmic vesicle GO: 0031410 4.32E−05 1.29E−05 1.20E−11

TABLE 3 Comparative microRNA Sequences from Isolated Microvesicles MDA- MDA- MDA- MB- MB- MB- MCF7: MCF7: MCF7: 231: 231: 231: Exo HA UCF Exo HA UCF hsa-let-7a-1 3 12 28 28 39 26 hsa-let-7a-2 434 419 632 1965 1904 1500 hsa-let-7a-3 753 743 616 1794 1512 924 hsa-let-7b 275 328 652 532 396 1334 hsa-tet-7c 8 17 13 6 9 13 hsa-let-7d 258 257 495 312 239 408 hsa-let-7e 414 433 691 417 328 632 hsa-let-7f-1 501 338 553 404 205 414 hsa-let-7f-2 760 792 588 987 972 150 hsa-let-7g 383 311 6 577 542 4 hsa-let-7i 343 295 1215 276 381 420 hsa-mir-100 1 2 0 11593 8912 189 hsa-mir-101-1 189 143 293 127 234 118 hsa-mir-101-2 110 13 131 3 34 43 hsa-mir-103a-1 552 471 522 856 382 590 hsa-mir-103a-2 625 471 654 905 415 714 hsa-mir-103b-2 0 0 1049 0 0 830 hsa-mir-106b 432 421 6 115 206 3 hsa-mir-107 17 18 0 22 20 0 hsa-mir-10a 2 0 0 48 181 1 hsa-mir-1180 17 16 0 5 14 0 hsa-mir-1246 9 12 13 3 0 0 hsa-mir-1247 2 4 0 0 0 0 hsa-mir-1248 3 1 1 8 12 3 hsa-mir-125a 553 600 842 719 824 1642 hsa-mir-125b-1 0 12 0 4691 4603 3456 hsa-mir-125b-2 23 7 12 1055 681 2717 hsa-mir-126 41 46 129 125 73 189 hsa-mir-128-1 83 67 72 11 17 28 hsa-mir-128-2 1 5 21 3 0 1 hsa-mir-1301 5 8 1 0 1 1 hsa-mir-1306 6 6 14 1 4 21 hsa-mir-1307 247 113 9 76 114 2 hsa-mir-130a 1 0 1 301 457 254 hsa-mir-130b 30 28 54 88 22 43 hsa-mir-132 2 5 1 11 8 0 hsa-mir-135a-1 51 36 91 0 0 0 hsa-mir-135a-2 15 7 8 0 0 0 hsa-mir-135b 47 21 0 9 7 0 hsa-mir-138-1 0 2 0 196 214 304 hsa-mir-138-2 0 0 0 32 28 33 hsa-mir-139 5 2 0 74 68 2 hsa-mir-140 49 39 74 170 140 255 hsa-mir-141 242 225 1147 2 2 2 hsa-mir-145 4 4 10 12 4 12 hsa-mir-146a 0 0 0 207 452 381 hsa-mir-146b 13 17 46 17 20 37 hsa-mir-148a 121 126 1 154 107 3 hsa-mir-148b 51 37 80 29 25 17 hsa-mir-149 22 21 66 16 10 32 hsa-mir-151a 449 365 254 814 401 305 hsa-mir-152 16 9 0 24 15 0 hsa-mir-15a 319 287 3 53 230 2 hsa-mir-15b 224 249 283 68 139 242 hsa-mir-16-1 42 67 0 218 320 2 hsa-mir-16-2 646 675 825 523 695 857 hsa-mir-17 88 84 155 110 225 189 hsa-mir-181a-1 82 132 50 654 730 322 hsa-mir-181a-2 15 6 22 175 310 528 hsa-mir-181b-2 45 49 30 70 104 102 hsa-mir-181c 10 13 17 5 13 5 hsa-mir-182 80 66 9 80 48 7 hsa-mir-183 81 68 1 37 30 0 hsa-mir-185 83 81 154 44 31 65 hsa-mir-186 15 15 0 5 18 0 hsa-mir-188 4 2 16 1 2 1 hsa-mir-18a 28 31 71 19 58 25 hsa-mir-191 1157 1032 65 1323 730 59 hsa-mir-192 17 11 0 40 21 0 hsa-mir-193a 48 42 70 39 39 42 hsa-mir-193b 240 166 324 35 21 51 hsa-mir-195 74 59 0 25 29 0 hsa-mir-197 32 27 27 101 52 235 hsa-mir-19a 99 89 319 77 173 162 hsa-mir-19b-1 370 307 547 656 728 345 hsa-mir-19b-2 25 2 4 34 80 3 hsa-mir-200a 755 332 1974 17 33 24 hsa-mir-200b 137 124 232 13 22 49 hsa-mir-200c 735 563 1234 5 3 11 hsa-mir-203a 232 221 560 0 1 4 hsa-mir-205 33 29 40 2 7 10 hsa-mir-20a 36 42 68 25 144 77 hsa-mir-21 22802 18466 75371 11350 14198 53384 hsa-mir-210 53 48 2 111 159 3 hsa-mir-2110 6 9 0 2 1 0 hsa-mir-218-1 0 0 1 67 49 10 hsa-mir-218-2 0 0 1 2 9 10 hsa-mir-22 77 84 0 229 102 2 hsa-mir-221 19 24 0 2327 1787 7 hsa-mir-222 16 13 2 1854 1083 27 hsa-mir-224 0 0 0 11 8 1 hsa-mir-23a 1960 1813 0 2702 2746 0 hsa-mir-23b 229 236 617 1499 1168 4578 hsa-mir-24-1 587 538 559 4852 2679 2260 hsa-mir-24-2 146 80 12 479 229 58 hsa-mir-25 101 79 7 19 21 2 hsa-mir-26a-1 550 554 1055 738 1308 1231 hsa-mir-26a-2 20 17 12 4 17 13 hsa-mir-26b 181 152 353 163 196 172 hsa-mir-27a 1148 966 4 1799 3665 1 hsa-mir-27b 133 144 306 226 687 1281 hsa-mir-28 10 10 14 14 10 15 hsa-mir-296 24 29 1 0 0 0 hsa-mir-29a 496 438 7 772 2790 9 hsa-mir-29b-1 323 169 0 477 1619 0 hsa-mir-29b-2 511 260 0 657 2066 0 hsa-mir-29c 247 154 0 147 491 0 hsa-mir-301a 192 111 6 38 23 0 hsa-mir-3065 7 1 22 6 7 10 hsa-mir-3074 2 0 314 0 0 461 hsa-mir-30a 7 5 0 255 481 6 hsa-mir-30b 393 369 0 323 525 1 hsa-mir-30c-1 35 43 18 34 80 54 hsa-mir-30c-2 71 78 119 180 327 371 hsa-mir-30d 325 442 5 212 394 2 hsa-mir-30e 33 30 105 42 97 65 hsa-mir-3184 0 0 5 0 0 6 hsa-mir-32 21 22 0 12 11 0 hsa-mir-320a 199 281 47 572 369 0 hsa-mir-320b-1 1 9 3 5 2 45 hsa-mir-320c-2 0 1 10 17 4 87 hsa-mir-324 96 74 1 41 56 1 hsa-mir-326 10 16 0 7 3 0 hsa-mir-331 11 9 13 21 7 34 hsa-mir-335 93 82 97 8 28 22 hsa-mir-339 234 254 186 49 40 3 hsa-mir-33a 7 11 13 3 10 4 hsa-mir-33b 18 7 0 1 7 0 hsa-mir-340 26 22 0 2 3 0 hsa-mir-342 3072 2134 4956 149 67 246 hsa-mir-345 22 46 66 13 17 29 hsa-mir-34a 240 195 1 117 324 2 hsa-mir-3529 0 0 108 0 0 7 hsa-mir-361 74 90 1 40 42 1 hsa-mir-362 13 3 12 0 4 1 hsa-mir-3620 6 5 7 2 1 5 hsa-mir-3648 31 36 42 4 0 0 hsa-mir-365a 111 108 57 2 29 14 hsa-mir-365b 7 0 13 0 0 0 hsa-mir-3676 305 410 541 96 154 281 hsa-mir-3687 15 48 61 0 0 1 hsa-mir-374b 75 56 4 32 32 2 hsa-mir-374c 0 0 93 0 0 25 hsa-mir-375 37 64 5 0 2 0 hsa-mir-378a 53 41 16 7 8 10 hsa-mir-421 9 7 1 6 7 0 hsa-mir-423 246 228 311 652 190 451 hsa-mir-424 54 46 2 61 132 0 hsa-mir-425 369 326 5 221 106 7 hsa-mir-4286 1 3 8 9 0 32 hsa-mir-429 119 64 247 6 6 11 hsa-mir-4454 0 13 0 0 0 63 hsa-mir-4466 12 12 1 3 0 0 hsa-mir-4488 1 8 1 1 1 0 hsa-mir-4492 4 7 4 3 3 2 hsa-mir-4497 3 5 4 0 0 3 hsa-mir-4516 12 30 15 1 1 2 hsa-mir-4532 2 4 1 0 2 2 hsa-mir-454 145 103 1 33 25 0 hsa-mir-455 3 8 12 511 171 573 hsa-mir-484 456 388 487 146 52 133 hsa-mir-486 2 1 0 24 7 20 hsa-mir-489 296 225 18 8 6 1 hsa-mir-497 45 40 0 3 10 0 hsa-mir-500a 9 7 10 0 1 2 hsa-mir-501 7 9 7 1 0 1 hsa-mir-502 1 8 1 0 1 1 hsa-mir-503 26 20 3 14 35 3 hsa-mir-505 36 33 3 14 20 0 hsa-mir-532 7 11 7 2 2 13 hsa-mir-551b 0 0 1 126 79 60 hsa-mir-574 25 37 22 119 232 878 hsa-mir-590 37 18 85 23 22 18 hsa-mir-6087 39 43 68 18 17 46 hsa-mir-625 58 41 142 46 33 85 hsa-mir-629 9 15 1 6 4 0 hsa-mir-642a 5 1 1 5 3 19 hsa-mir-652 73 75 201 33 19 47 hsa-mir-653 17 19 0 0 1 0 hsa-mir-660 60 57 145 1 14 16 hsa-mir-663a 13 13 0 1 0 0 hsa-mir-663b 1 1 1 0 0 0 hsa-mir-664a 6 7 0 6 11 0 hsa-mir-671 9 12 6 14 9 16 hsa-mir-708 6 6 0 7 2 0 hsa-mir-7-1 123 83 94 19 19 6 hsa-mir-7-2 5 0 94 0 0 6 hsa-mir-7-3 5 0 94 0 0 6 hsa-mir-744 7 10 15 27 24 49 hsa-mir-769 7 9 33 15 14 41 hsa-mir-877 1 5 8 3 3 4 hsa-mir-9-2 12 8 9 1 3 0 hsa-mir-92a-1 51 33 49 128 145 250 hsa-mir-92a-2 30 18 11 2 13 2 hsa-mir-92b 45 35 71 108 109 304 hsa-mir-93 306 349 9 170 256 1 hsa-mir-935 2 5 15 1 0 0 hsa-mir-941-1 2 3 5 3 3 13 hsa-mir-941-3 2 3 5 3 3 13 hsa-mir-95 9 8 1 2 1 0 hsa-mir-96 16 22 1 18 29 0 hsa-mir-98 76 66 3 25 25 0 hsa-mir-99a 51 36 75 14 15 45 hsa-mir-99b 256 330 766 319 186 1139

TABLE 4 Differential Protein Content of Isolated MIcrovesicles from Different Breast Cancer Cell Condition Media: Proteomic Analysis

REFERENCES

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1. A method for the isolation of microvesicles from a sample containing microvesicles, comprising: (i) contacting the sample with at least one polysaccharide under conditions for the isolation of the microvesicles.
 2. The method according to claim 1, wherein the polysaccharide is a natural or synthetic polysaccharide.
 3. The method according to claim 1, wherein the polysaccharide is a linear or branched polysaccharide.
 4. The method according to claim 1, wherein the polysaccharide has a molecular weight of at least 2 KDa.
 5. The method according to claim 1, wherein the polysaccharide is dextran, dextran sulfate, amylose, cellulose, chitin, agarose, callose, laminarin, chrysolaminarin, mannan, fucoidan, a glycosaminoglycan, derivatives thereof, or mixtures thereof.
 6. The method according to claim 5, wherein the glycosaminoglycan is chondroitin sulfate, dermatan sulfate, keratan sulfate, heparin, heparan sulfate or hyaluronan.
 7. The method according to any claim 1, wherein the polysaccharide is bonded to a solid-matrix.
 8. The method according to claim 7, wherein the solid matrix comprises polystyrene or glass or a paramagnetic particle or a microfluidic apparatus.
 9. The method according to claim 1, wherein the polysaccharide is bonded to a ligand for the purification of the microvesicles.
 10. The method according to claim 9, wherein the ligand comprises a component of the biotin avidin system.
 11. The method according to claim 1, wherein the sample comprises a biological sample.
 12. The method according to claim 11, wherein the biological sample comprises: (a) whole blood, blood serum, plasma, urine, saliva, milk, other bodily fluid, or tissue biopsy, (b) a fluid, media or discharge form a unicellular or multicellular organism, (c) a bodily fluid from wild or farmed animals, birds or fish; or (d) food products, wherein the product is a dairy or meat product.
 13. The method according to claim 11, wherein the biological sample is derived from a subject with cancer or other pathological condition.
 14. The method according to claim 1, wherein the conditions for the isolation of the microvesicles comprise: (a) contacting the sample with a solution comprising the at least one polysaccharide to form a polysaccharide-microvesicle complex; and (b) separating the polysaccharide-microvesicle complex from the solution.
 15. The method according to claim 14, wherein the sample is contacted with the polysaccharide at a temperature of 2° C. to 37° C. for about 10 minutes to 20 hours.
 16. The method according to claim 14, wherein the polysaccharide-microvesicle complex is separated by subjecting the solution to centrifugal force or by filtering the solution, or a combination thereof.
 17. The method according to claim 16, wherein the solution is subjected to a centrifugal force of 3,000 g to 20,000 g.
 18. The method according to claim 16, wherein the solution is filtered using a filter with a pore size of 0.45 μm to 2.0 μm.
 19. A method for the diagnosis of a pathological condition comprising: (i) obtaining a biological sample from a subject; (ii) isolating microvesicles from the sample using a method defined in claims 1; (iii) detecting: (a) one or more pathological markers, and/or markers for a particular tissue or cell-type, wherein the presence of the pathological marker in the sample indicates the presence of the condition in the subject; and/or (b) one or more healthy normal markers for a particular tissue or cell-type, wherein the absence or decrease of the healthy normal marker in the sample indicates the presence of the pathological condition in the subject.
 20. A method for the diagnosis of a pathological condition comprising: (i) obtaining a biological sample from a subject; (ii) isolating microvesicles from the sample using a method defined in claims 1; (iii) measuring the isolated microvesicles for one or more: (a) biomarkers for the pathological condition, (b) other pathological markers; and/or (c) markers for a particular tissue or cell-type, (iv) comparing the level of markers defined in step (iii) to a reference value, wherein if the level of markers is increased or decreased relative to the reference value, identifying the subject as having an increased probability of having the pathological condition.
 21. The method according to claim 19, wherein the pathological condition is cancer, cardiovascular disease, genetic disease, liver disease, chronic kidney disease, respiratory disease, autoimmune diseases, heart disease, stroke, asthma, diabetes, osteoporosis, Alzheimer's disease, or an infectious disease, wherein the infectious disease is caused by a virus, bacteria, fungi, protozoa, multicellular organism or a priori.
 22. An assay for detecting a pathological condition in a subject, comprising, (i) obtaining a biological sample from the subject; (ii) isolating microvesicles from the sample using a method as defined in claim 1; (iii) measuring the isolated microvesicles for one or more: (a) biomarkers for the pathological condition, (b) other pathological markers; and/or (c) markers for a particular tissue or cell-type, (iv) comparing the level of markers defined in step (iii) to a reference value, wherein if the level of markers is increased or decreased relative to the reference value, identifying the subject as having an increased probability of having the pathological condition.
 23. The assay according to claim 22, wherein the pathological condition is cancer, cardiovascular disease, genetic disease, liver disease, chronic kidney disease, respiratory disease, autoimmune diseases, heart disease, stroke, asthma, diabetes, osteoporosis, Alzheimer's disease, or an infectious disease, wherein the infectious disease is caused by a virus, bacteria, fungi, protozoa, multicellular organism or a prion.
 24. A method for determining if a subject, suffering from a pathological condition, is responsive to a therapy for the treatment of the condition, comprising, (i) performing an assay for detecting a pathological condition in a subject as defined in claim 22; (ii) subsequently administering the therapy to the subject; (iii) performing a second assay as described in claim 22 in a second biological sample obtained from the subject, wherein a decrease in the level of markers in the second biological sample indicates the subject is responsive to the therapy.
 25. The method according to claim 24, wherein the pathological condition is cancer, cardiovascular disease, genetic disease, liver disease, chronic kidney disease, respiratory disease, autoimmune diseases, heart disease, stroke, asthma, diabetes, osteoporosis, Alzheimer's disease, or an infectious disease, wherein the infectious disease is caused by a virus, bacteria, fungi, protozoa, multicellular organism or a prion.
 26. A method for the treatment of a pathological condition comprising administering to a subject in need thereof a therapeutically effective amount of a polysaccharide to decrease the level of microvesicles associated with the condition in the subject.
 27. An assay for detecting a pathological condition in, or contamination of, a food product, comprising: (i) obtaining a sample from the food product or source organism; (ii) isolating microvesicles from the sample using a method as defined in claim 1; (iii) detecting one or more pathological markers, such as a pathogenic, infectious or other disease condition, wherein the presence of the pathological marker in the sample indicates the presence of the pathological condition in the sample.
 28. An assay for detecting a pathological condition in a wild, domestic or farmed animal, bird or fish, comprising: (i) obtaining a sample from the organism; (ii) isolating microvesicles from the sample using a method as defined in claims 1; (iii) detecting one or more pathological markers, such as a pathogenic, infectious or other disease condition, wherein the presence of the pathological marker in the sample indicates the presence of the pathological condition in the sample.
 29. An assay for detecting and characterizing microvesicles from a fluid, media or discharge from an organism, comprising: (i) obtaining a sample from the organism; (ii) isolating microvesicles from the sample using a method as defined in claim 1; (iii) detecting one or more markers, wherein the marker is a microvesicle-specific protein, RNA or other molecular characterization. 